Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02129

Experiment: Protocatechuic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_02128 and H281DRAFT_02129 are separated by 84 nucleotidesH281DRAFT_02129 and H281DRAFT_02130 are separated by 437 nucleotides H281DRAFT_02128: H281DRAFT_02128 - hypothetical protein, at 262,651 to 263,289 _02128 H281DRAFT_02129: H281DRAFT_02129 - diguanylate cyclase (GGDEF) domain-containing protein, at 263,374 to 264,912 _02129 H281DRAFT_02130: H281DRAFT_02130 - methyl-accepting chemotaxis sensory transducer, at 265,350 to 267,179 _02130 Position (kb) 263 264 265Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 262.377 kb on + strandat 262.378 kb on - strandat 262.407 kb on + strandat 262.474 kb on + strandat 262.502 kb on - strandat 262.554 kb on + strandat 262.554 kb on + strandat 262.555 kb on - strandat 262.555 kb on - strandat 262.555 kb on - strandat 262.574 kb on + strandat 262.574 kb on + strandat 262.694 kb on + strandat 262.758 kb on - strand, within H281DRAFT_02128at 263.263 kb on - strandat 263.428 kb on + strandat 263.428 kb on + strandat 263.477 kb on + strandat 263.478 kb on - strandat 263.478 kb on - strandat 263.478 kb on - strandat 263.478 kb on - strandat 263.539 kb on - strand, within H281DRAFT_02129at 263.545 kb on + strand, within H281DRAFT_02129at 263.553 kb on + strandat 263.784 kb on - strand, within H281DRAFT_02129at 264.068 kb on + strand, within H281DRAFT_02129at 264.068 kb on + strand, within H281DRAFT_02129at 264.069 kb on - strand, within H281DRAFT_02129at 264.069 kb on - strand, within H281DRAFT_02129at 264.069 kb on - strand, within H281DRAFT_02129at 264.069 kb on - strand, within H281DRAFT_02129at 264.069 kb on - strand, within H281DRAFT_02129at 264.110 kb on + strand, within H281DRAFT_02129at 264.111 kb on - strand, within H281DRAFT_02129at 264.283 kb on + strand, within H281DRAFT_02129at 264.283 kb on + strand, within H281DRAFT_02129at 264.468 kb on - strand, within H281DRAFT_02129at 264.524 kb on + strand, within H281DRAFT_02129at 264.525 kb on - strand, within H281DRAFT_02129at 264.525 kb on - strand, within H281DRAFT_02129at 264.564 kb on + strand, within H281DRAFT_02129at 264.564 kb on + strand, within H281DRAFT_02129at 264.565 kb on - strand, within H281DRAFT_02129at 264.566 kb on + strand, within H281DRAFT_02129at 264.567 kb on - strand, within H281DRAFT_02129at 264.701 kb on - strand, within H281DRAFT_02129at 264.713 kb on + strand, within H281DRAFT_02129at 264.714 kb on - strand, within H281DRAFT_02129at 264.714 kb on - strand, within H281DRAFT_02129at 264.714 kb on - strand, within H281DRAFT_02129at 264.714 kb on - strand, within H281DRAFT_02129at 264.714 kb on - strand, within H281DRAFT_02129at 264.982 kb on + strandat 264.983 kb on - strandat 264.983 kb on - strandat 265.026 kb on + strandat 265.033 kb on + strandat 265.033 kb on + strandat 265.089 kb on + strandat 265.089 kb on + strandat 265.202 kb on + strandat 265.203 kb on - strandat 265.272 kb on + strandat 265.272 kb on + strandat 265.272 kb on + strandat 265.272 kb on + strandat 265.273 kb on - strandat 265.276 kb on + strandat 265.276 kb on + strandat 265.276 kb on + strandat 265.276 kb on + strandat 265.277 kb on - strandat 265.347 kb on + strandat 265.347 kb on + strandat 265.347 kb on + strandat 265.347 kb on + strandat 265.348 kb on - strandat 265.348 kb on - strandat 265.348 kb on - strandat 265.349 kb on + strandat 265.349 kb on + strandat 265.349 kb on + strandat 265.349 kb on + strandat 265.350 kb on - strandat 265.350 kb on - strandat 265.350 kb on - strandat 265.376 kb on + strandat 265.636 kb on + strand, within H281DRAFT_02130at 265.637 kb on - strand, within H281DRAFT_02130at 265.637 kb on - strand, within H281DRAFT_02130at 265.738 kb on - strandat 265.738 kb on - strand, within H281DRAFT_02130at 265.782 kb on - strandat 265.860 kb on + strand, within H281DRAFT_02130at 265.861 kb on - strand, within H281DRAFT_02130at 265.869 kb on + strand, within H281DRAFT_02130at 265.869 kb on + strand, within H281DRAFT_02130at 265.905 kb on + strand, within H281DRAFT_02130at 265.906 kb on - strand, within H281DRAFT_02130

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Per-strain Table

Position Strand Gene LocusTag Fraction Protocatechuic Acid (C)
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262,377 + -0.4
262,378 - -1.8
262,407 + -0.1
262,474 + +0.9
262,502 - +0.9
262,554 + +0.0
262,554 + +0.4
262,555 - +0.2
262,555 - +0.6
262,555 - +0.5
262,574 + -1.1
262,574 + -1.2
262,694 + -1.1
262,758 - H281DRAFT_02128 0.17 +1.0
263,263 - -0.1
263,428 + -0.4
263,428 + -0.9
263,477 + +0.0
263,478 - +0.4
263,478 - +0.2
263,478 - +0.5
263,478 - +0.4
263,539 - H281DRAFT_02129 0.11 -0.5
263,545 + H281DRAFT_02129 0.11 -1.0
263,553 + -1.3
263,784 - H281DRAFT_02129 0.27 -0.0
264,068 + H281DRAFT_02129 0.45 +0.1
264,068 + H281DRAFT_02129 0.45 -2.7
264,069 - H281DRAFT_02129 0.45 -3.1
264,069 - H281DRAFT_02129 0.45 -1.3
264,069 - H281DRAFT_02129 0.45 +0.2
264,069 - H281DRAFT_02129 0.45 +0.4
264,069 - H281DRAFT_02129 0.45 +0.4
264,110 + H281DRAFT_02129 0.48 -0.7
264,111 - H281DRAFT_02129 0.48 +0.3
264,283 + H281DRAFT_02129 0.59 -0.4
264,283 + H281DRAFT_02129 0.59 +0.3
264,468 - H281DRAFT_02129 0.71 +0.2
264,524 + H281DRAFT_02129 0.75 +0.5
264,525 - H281DRAFT_02129 0.75 -0.4
264,525 - H281DRAFT_02129 0.75 -0.1
264,564 + H281DRAFT_02129 0.77 -0.9
264,564 + H281DRAFT_02129 0.77 +1.5
264,565 - H281DRAFT_02129 0.77 -0.3
264,566 + H281DRAFT_02129 0.77 +1.5
264,567 - H281DRAFT_02129 0.78 +0.4
264,701 - H281DRAFT_02129 0.86 -0.5
264,713 + H281DRAFT_02129 0.87 -0.1
264,714 - H281DRAFT_02129 0.87 -0.2
264,714 - H281DRAFT_02129 0.87 +0.3
264,714 - H281DRAFT_02129 0.87 +0.2
264,714 - H281DRAFT_02129 0.87 +0.6
264,714 - H281DRAFT_02129 0.87 -0.9
264,982 + +0.3
264,983 - +0.4
264,983 - -0.9
265,026 + +0.1
265,033 + -0.3
265,033 + +0.1
265,089 + -0.0
265,089 + +0.3
265,202 + -0.3
265,203 - +0.2
265,272 + +0.6
265,272 + +0.1
265,272 + -0.7
265,272 + -0.2
265,273 - +0.0
265,276 + -0.4
265,276 + +0.3
265,276 + +0.6
265,276 + +1.0
265,277 - +0.4
265,347 + +0.7
265,347 + +0.7
265,347 + +0.6
265,347 + +1.5
265,348 - -0.5
265,348 - -0.0
265,348 - -0.0
265,349 + -2.0
265,349 + +1.1
265,349 + -0.0
265,349 + +0.2
265,350 - +0.0
265,350 - +0.5
265,350 - -1.3
265,376 + +0.3
265,636 + H281DRAFT_02130 0.16 -0.6
265,637 - H281DRAFT_02130 0.16 +0.4
265,637 - H281DRAFT_02130 0.16 -0.6
265,738 - +1.4
265,738 - H281DRAFT_02130 0.21 +0.5
265,782 - -1.5
265,860 + H281DRAFT_02130 0.28 +0.9
265,861 - H281DRAFT_02130 0.28 -0.0
265,869 + H281DRAFT_02130 0.28 +1.9
265,869 + H281DRAFT_02130 0.28 +1.1
265,905 + H281DRAFT_02130 0.30 +0.3
265,906 - H281DRAFT_02130 0.30 +1.1

Or see this region's nucleotide sequence