Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02116 and H281DRAFT_02117 overlap by 4 nucleotides H281DRAFT_02117 and H281DRAFT_02118 overlap by 4 nucleotides
H281DRAFT_02116: H281DRAFT_02116 - transcriptional regulator, LacI family, at 246,032 to 247,018
_02116
H281DRAFT_02117: H281DRAFT_02117 - Mannose or cellobiose epimerase, N-acyl-D-glucosamine 2-epimerase family, at 247,015 to 248,298
_02117
H281DRAFT_02118: H281DRAFT_02118 - fructokinase, at 248,295 to 249,206
_02118
Position (kb) 247
248
249 Strain fitness (log2 ratio) -2
-1
0
1
2 at 246.168 kb on - strand, within H281DRAFT_02116 at 246.318 kb on + strand, within H281DRAFT_02116 at 246.378 kb on + strand, within H281DRAFT_02116 at 246.379 kb on - strand, within H281DRAFT_02116 at 246.636 kb on + strand, within H281DRAFT_02116 at 247.130 kb on - strand at 247.247 kb on - strand, within H281DRAFT_02117 at 247.352 kb on - strand, within H281DRAFT_02117 at 247.414 kb on + strand, within H281DRAFT_02117 at 247.582 kb on + strand, within H281DRAFT_02117 at 247.657 kb on + strand, within H281DRAFT_02117 at 247.658 kb on - strand, within H281DRAFT_02117 at 247.768 kb on + strand, within H281DRAFT_02117 at 247.769 kb on - strand, within H281DRAFT_02117 at 247.769 kb on - strand, within H281DRAFT_02117 at 247.769 kb on - strand, within H281DRAFT_02117 at 247.864 kb on + strand, within H281DRAFT_02117 at 247.954 kb on + strand, within H281DRAFT_02117 at 247.957 kb on + strand, within H281DRAFT_02117 at 247.958 kb on - strand, within H281DRAFT_02117 at 248.000 kb on - strand at 248.081 kb on - strand, within H281DRAFT_02117 at 248.081 kb on - strand, within H281DRAFT_02117 at 248.100 kb on + strand, within H281DRAFT_02117 at 248.100 kb on + strand, within H281DRAFT_02117 at 248.100 kb on + strand, within H281DRAFT_02117 at 248.170 kb on + strand at 248.171 kb on - strand at 248.227 kb on + strand at 248.227 kb on + strand at 248.228 kb on - strand at 248.593 kb on - strand, within H281DRAFT_02118 at 248.593 kb on - strand, within H281DRAFT_02118 at 248.762 kb on - strand, within H281DRAFT_02118 at 248.809 kb on - strand, within H281DRAFT_02118 at 249.036 kb on - strand, within H281DRAFT_02118 at 249.204 kb on + strand at 249.219 kb on - strand at 249.296 kb on + strand at 249.297 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 246,168 - H281DRAFT_02116 0.14 +1.5 246,318 + H281DRAFT_02116 0.29 -0.1 246,378 + H281DRAFT_02116 0.35 +1.1 246,379 - H281DRAFT_02116 0.35 +0.5 246,636 + H281DRAFT_02116 0.61 -0.9 247,130 - +0.6 247,247 - H281DRAFT_02117 0.18 +0.1 247,352 - H281DRAFT_02117 0.26 +0.6 247,414 + H281DRAFT_02117 0.31 -0.6 247,582 + H281DRAFT_02117 0.44 -2.5 247,657 + H281DRAFT_02117 0.50 -0.0 247,658 - H281DRAFT_02117 0.50 -0.2 247,768 + H281DRAFT_02117 0.59 +0.4 247,769 - H281DRAFT_02117 0.59 +0.1 247,769 - H281DRAFT_02117 0.59 +0.5 247,769 - H281DRAFT_02117 0.59 +0.3 247,864 + H281DRAFT_02117 0.66 +0.6 247,954 + H281DRAFT_02117 0.73 +1.6 247,957 + H281DRAFT_02117 0.73 +0.4 247,958 - H281DRAFT_02117 0.73 +0.2 248,000 - +1.2 248,081 - H281DRAFT_02117 0.83 +0.5 248,081 - H281DRAFT_02117 0.83 +0.4 248,100 + H281DRAFT_02117 0.85 -0.1 248,100 + H281DRAFT_02117 0.85 -0.1 248,100 + H281DRAFT_02117 0.85 +0.1 248,170 + +0.6 248,171 - +0.1 248,227 + +0.4 248,227 + -0.5 248,228 - +1.9 248,593 - H281DRAFT_02118 0.33 +0.5 248,593 - H281DRAFT_02118 0.33 +0.4 248,762 - H281DRAFT_02118 0.51 -1.0 248,809 - H281DRAFT_02118 0.56 -1.4 249,036 - H281DRAFT_02118 0.81 +0.7 249,204 + -1.4 249,219 - -0.2 249,296 + -0.8 249,297 - +0.0
Or see this region's nucleotide sequence