Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02078

Experiment: Protocatechuic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_02076 and H281DRAFT_02077 are separated by 173 nucleotidesH281DRAFT_02077 and H281DRAFT_02078 are separated by 175 nucleotidesH281DRAFT_02078 and H281DRAFT_02079 are separated by 432 nucleotides H281DRAFT_02076: H281DRAFT_02076 - methionine synthase (B12-dependent), at 198,565 to 201,267 _02076 H281DRAFT_02077: H281DRAFT_02077 - hypothetical protein, at 201,441 to 201,647 _02077 H281DRAFT_02078: H281DRAFT_02078 - protein of unknown function (DUF1840), at 201,823 to 202,149 _02078 H281DRAFT_02079: H281DRAFT_02079 - arginyl-tRNA synthetase, at 202,582 to 204,384 _02079 Position (kb) 201 202 203Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 201.205 kb on + strandat 201.266 kb on - strandat 201.308 kb on + strandat 201.309 kb on - strandat 201.309 kb on - strandat 201.309 kb on - strandat 201.311 kb on - strandat 201.332 kb on - strandat 201.345 kb on + strandat 201.345 kb on + strandat 201.360 kb on + strandat 201.360 kb on + strandat 201.409 kb on - strandat 201.412 kb on + strandat 201.412 kb on + strandat 201.412 kb on + strandat 201.412 kb on + strandat 201.413 kb on - strandat 201.460 kb on + strandat 201.757 kb on - strandat 201.765 kb on + strandat 201.765 kb on + strandat 201.765 kb on + strandat 201.766 kb on - strandat 201.766 kb on - strandat 201.887 kb on + strand, within H281DRAFT_02078at 202.015 kb on - strand, within H281DRAFT_02078at 202.038 kb on + strand, within H281DRAFT_02078at 202.038 kb on + strand, within H281DRAFT_02078at 202.039 kb on - strand, within H281DRAFT_02078at 202.058 kb on - strand, within H281DRAFT_02078at 202.058 kb on - strand, within H281DRAFT_02078at 202.098 kb on + strand, within H281DRAFT_02078at 202.140 kb on + strandat 202.140 kb on + strandat 202.140 kb on + strandat 202.141 kb on - strandat 202.224 kb on - strandat 202.278 kb on + strandat 202.278 kb on + strandat 202.278 kb on + strandat 202.278 kb on + strandat 202.278 kb on + strandat 202.278 kb on + strandat 202.278 kb on + strandat 202.279 kb on - strandat 202.279 kb on - strandat 202.281 kb on + strandat 202.281 kb on + strandat 202.281 kb on + strandat 202.282 kb on - strandat 202.282 kb on - strandat 202.282 kb on - strandat 202.292 kb on - strandat 202.423 kb on + strandat 202.423 kb on + strandat 202.423 kb on + strandat 202.423 kb on + strandat 202.423 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Protocatechuic Acid (C)
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201,205 + -3.5
201,266 - +0.2
201,308 + +0.8
201,309 - +0.4
201,309 - -0.6
201,309 - -1.1
201,311 - -0.6
201,332 - +0.1
201,345 + -0.1
201,345 + -0.3
201,360 + +0.4
201,360 + -0.1
201,409 - +0.1
201,412 + -1.7
201,412 + -0.2
201,412 + +0.4
201,412 + -0.8
201,413 - +0.7
201,460 + -0.5
201,757 - +0.2
201,765 + -0.0
201,765 + -0.2
201,765 + -0.3
201,766 - -0.5
201,766 - -1.2
201,887 + H281DRAFT_02078 0.20 +1.4
202,015 - H281DRAFT_02078 0.59 -0.1
202,038 + H281DRAFT_02078 0.66 +2.1
202,038 + H281DRAFT_02078 0.66 +0.8
202,039 - H281DRAFT_02078 0.66 +0.8
202,058 - H281DRAFT_02078 0.72 +0.8
202,058 - H281DRAFT_02078 0.72 +0.2
202,098 + H281DRAFT_02078 0.84 -0.4
202,140 + +0.2
202,140 + +0.0
202,140 + +0.6
202,141 - +0.6
202,224 - +1.8
202,278 + -0.2
202,278 + +0.2
202,278 + +0.2
202,278 + +0.3
202,278 + -0.6
202,278 + -1.5
202,278 + +0.2
202,279 - +0.6
202,279 - -0.6
202,281 + -0.0
202,281 + +0.2
202,281 + +0.5
202,282 - -0.8
202,282 - +1.2
202,282 - +0.1
202,292 - -0.9
202,423 + +0.7
202,423 + -0.1
202,423 + -0.5
202,423 + +0.9
202,423 + -0.1

Or see this region's nucleotide sequence