Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02076 and H281DRAFT_02077 are separated by 173 nucleotides H281DRAFT_02077 and H281DRAFT_02078 are separated by 175 nucleotides H281DRAFT_02078 and H281DRAFT_02079 are separated by 432 nucleotides
H281DRAFT_02076: H281DRAFT_02076 - methionine synthase (B12-dependent), at 198,565 to 201,267
_02076
H281DRAFT_02077: H281DRAFT_02077 - hypothetical protein, at 201,441 to 201,647
_02077
H281DRAFT_02078: H281DRAFT_02078 - protein of unknown function (DUF1840), at 201,823 to 202,149
_02078
H281DRAFT_02079: H281DRAFT_02079 - arginyl-tRNA synthetase, at 202,582 to 204,384
_02079
Position (kb)
201
202
203 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 201.205 kb on + strand at 201.266 kb on - strand at 201.308 kb on + strand at 201.309 kb on - strand at 201.309 kb on - strand at 201.309 kb on - strand at 201.311 kb on - strand at 201.332 kb on - strand at 201.345 kb on + strand at 201.345 kb on + strand at 201.360 kb on + strand at 201.360 kb on + strand at 201.409 kb on - strand at 201.412 kb on + strand at 201.412 kb on + strand at 201.412 kb on + strand at 201.412 kb on + strand at 201.413 kb on - strand at 201.460 kb on + strand at 201.757 kb on - strand at 201.765 kb on + strand at 201.765 kb on + strand at 201.765 kb on + strand at 201.766 kb on - strand at 201.766 kb on - strand at 201.887 kb on + strand, within H281DRAFT_02078 at 202.015 kb on - strand, within H281DRAFT_02078 at 202.038 kb on + strand, within H281DRAFT_02078 at 202.038 kb on + strand, within H281DRAFT_02078 at 202.039 kb on - strand, within H281DRAFT_02078 at 202.058 kb on - strand, within H281DRAFT_02078 at 202.058 kb on - strand, within H281DRAFT_02078 at 202.098 kb on + strand, within H281DRAFT_02078 at 202.140 kb on + strand at 202.140 kb on + strand at 202.140 kb on + strand at 202.141 kb on - strand at 202.224 kb on - strand at 202.278 kb on + strand at 202.278 kb on + strand at 202.278 kb on + strand at 202.278 kb on + strand at 202.278 kb on + strand at 202.278 kb on + strand at 202.278 kb on + strand at 202.279 kb on - strand at 202.279 kb on - strand at 202.281 kb on + strand at 202.281 kb on + strand at 202.281 kb on + strand at 202.282 kb on - strand at 202.282 kb on - strand at 202.282 kb on - strand at 202.292 kb on - strand at 202.423 kb on + strand at 202.423 kb on + strand at 202.423 kb on + strand at 202.423 kb on + strand at 202.423 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 201,205 + -3.5 201,266 - +0.2 201,308 + +0.8 201,309 - +0.4 201,309 - -0.6 201,309 - -1.1 201,311 - -0.6 201,332 - +0.1 201,345 + -0.1 201,345 + -0.3 201,360 + +0.4 201,360 + -0.1 201,409 - +0.1 201,412 + -1.7 201,412 + -0.2 201,412 + +0.4 201,412 + -0.8 201,413 - +0.7 201,460 + -0.5 201,757 - +0.2 201,765 + -0.0 201,765 + -0.2 201,765 + -0.3 201,766 - -0.5 201,766 - -1.2 201,887 + H281DRAFT_02078 0.20 +1.4 202,015 - H281DRAFT_02078 0.59 -0.1 202,038 + H281DRAFT_02078 0.66 +2.1 202,038 + H281DRAFT_02078 0.66 +0.8 202,039 - H281DRAFT_02078 0.66 +0.8 202,058 - H281DRAFT_02078 0.72 +0.8 202,058 - H281DRAFT_02078 0.72 +0.2 202,098 + H281DRAFT_02078 0.84 -0.4 202,140 + +0.2 202,140 + +0.0 202,140 + +0.6 202,141 - +0.6 202,224 - +1.8 202,278 + -0.2 202,278 + +0.2 202,278 + +0.2 202,278 + +0.3 202,278 + -0.6 202,278 + -1.5 202,278 + +0.2 202,279 - +0.6 202,279 - -0.6 202,281 + -0.0 202,281 + +0.2 202,281 + +0.5 202,282 - -0.8 202,282 - +1.2 202,282 - +0.1 202,292 - -0.9 202,423 + +0.7 202,423 + -0.1 202,423 + -0.5 202,423 + +0.9 202,423 + -0.1
Or see this region's nucleotide sequence