Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01904 and H281DRAFT_01905 are separated by 30 nucleotides H281DRAFT_01905 and H281DRAFT_01906 are separated by 2 nucleotides H281DRAFT_01906 and H281DRAFT_01907 overlap by 14 nucleotides H281DRAFT_01907 and H281DRAFT_01908 overlap by 4 nucleotides H281DRAFT_01908 and H281DRAFT_01909 are separated by 167 nucleotides
H281DRAFT_01904: H281DRAFT_01904 - Cytochrome c, mono- and diheme variants, at 17,226 to 18,560
_01904
H281DRAFT_01905: H281DRAFT_01905 - hypothetical protein, at 18,591 to 18,767
_01905
H281DRAFT_01906: H281DRAFT_01906 - cytochrome c oxidase subunit 2, at 18,770 to 19,351
_01906
H281DRAFT_01907: H281DRAFT_01907 - cytochrome c oxidase subunit 1, at 19,338 to 20,963
_01907
H281DRAFT_01908: H281DRAFT_01908 - Cytochrome c553, at 20,960 to 21,769
_01908
H281DRAFT_01909: H281DRAFT_01909 - methyl-accepting chemotaxis sensory transducer with TarH sensor, at 21,937 to 23,589
_01909
Position (kb) 19
20
21 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 18.418 kb on - strand, within H281DRAFT_01904 at 18.473 kb on + strand at 18.473 kb on + strand at 18.474 kb on - strand at 18.477 kb on + strand at 18.477 kb on + strand at 18.477 kb on + strand at 18.477 kb on + strand at 18.478 kb on - strand at 18.478 kb on - strand at 18.478 kb on - strand at 18.478 kb on - strand at 18.478 kb on - strand at 18.559 kb on - strand at 18.640 kb on + strand, within H281DRAFT_01905 at 18.641 kb on - strand, within H281DRAFT_01905 at 18.641 kb on - strand, within H281DRAFT_01905 at 18.729 kb on + strand, within H281DRAFT_01905 at 18.729 kb on + strand, within H281DRAFT_01905 at 18.729 kb on + strand, within H281DRAFT_01905 at 19.050 kb on - strand, within H281DRAFT_01906 at 19.153 kb on + strand, within H281DRAFT_01906 at 19.153 kb on + strand, within H281DRAFT_01906 at 19.154 kb on - strand, within H281DRAFT_01906 at 19.179 kb on - strand at 19.350 kb on - strand at 19.394 kb on + strand at 19.395 kb on - strand at 19.473 kb on + strand at 19.476 kb on + strand at 19.476 kb on + strand at 19.476 kb on + strand at 19.512 kb on + strand, within H281DRAFT_01907 at 19.513 kb on - strand, within H281DRAFT_01907 at 19.680 kb on + strand, within H281DRAFT_01907 at 19.717 kb on - strand, within H281DRAFT_01907 at 19.717 kb on - strand, within H281DRAFT_01907 at 19.736 kb on - strand, within H281DRAFT_01907 at 19.736 kb on - strand, within H281DRAFT_01907 at 19.789 kb on + strand, within H281DRAFT_01907 at 19.854 kb on + strand, within H281DRAFT_01907 at 19.855 kb on - strand, within H281DRAFT_01907 at 19.858 kb on + strand, within H281DRAFT_01907 at 19.858 kb on - strand, within H281DRAFT_01907 at 19.859 kb on - strand, within H281DRAFT_01907 at 19.859 kb on - strand, within H281DRAFT_01907 at 19.934 kb on + strand, within H281DRAFT_01907 at 19.935 kb on - strand, within H281DRAFT_01907 at 19.992 kb on + strand, within H281DRAFT_01907 at 20.013 kb on + strand, within H281DRAFT_01907 at 20.014 kb on - strand, within H281DRAFT_01907 at 20.016 kb on - strand, within H281DRAFT_01907 at 20.023 kb on - strand, within H281DRAFT_01907 at 20.025 kb on + strand, within H281DRAFT_01907 at 20.025 kb on + strand, within H281DRAFT_01907 at 20.025 kb on + strand, within H281DRAFT_01907 at 20.026 kb on - strand, within H281DRAFT_01907 at 20.026 kb on - strand, within H281DRAFT_01907 at 20.061 kb on + strand, within H281DRAFT_01907 at 20.062 kb on - strand, within H281DRAFT_01907 at 20.062 kb on - strand, within H281DRAFT_01907 at 20.388 kb on + strand, within H281DRAFT_01907 at 20.388 kb on + strand, within H281DRAFT_01907 at 20.399 kb on + strand, within H281DRAFT_01907 at 20.400 kb on - strand, within H281DRAFT_01907 at 20.400 kb on - strand, within H281DRAFT_01907 at 20.472 kb on + strand, within H281DRAFT_01907 at 20.598 kb on + strand, within H281DRAFT_01907 at 20.598 kb on + strand, within H281DRAFT_01907 at 20.599 kb on - strand, within H281DRAFT_01907 at 20.634 kb on + strand, within H281DRAFT_01907 at 20.637 kb on + strand, within H281DRAFT_01907 at 20.643 kb on + strand, within H281DRAFT_01907 at 20.644 kb on - strand, within H281DRAFT_01907 at 20.717 kb on - strand, within H281DRAFT_01907 at 20.736 kb on + strand, within H281DRAFT_01907 at 20.737 kb on - strand, within H281DRAFT_01907 at 20.737 kb on - strand, within H281DRAFT_01907 at 20.737 kb on - strand, within H281DRAFT_01907 at 20.837 kb on + strand at 20.838 kb on - strand at 20.886 kb on + strand at 20.886 kb on + strand at 20.887 kb on - strand at 21.052 kb on - strand, within H281DRAFT_01908 at 21.146 kb on + strand, within H281DRAFT_01908 at 21.147 kb on - strand, within H281DRAFT_01908 at 21.329 kb on + strand, within H281DRAFT_01908 at 21.345 kb on - strand, within H281DRAFT_01908 at 21.447 kb on - strand at 21.449 kb on + strand, within H281DRAFT_01908 at 21.449 kb on + strand at 21.450 kb on - strand, within H281DRAFT_01908 at 21.736 kb on + strand at 21.749 kb on + strand at 21.768 kb on - strand at 21.862 kb on - strand at 21.875 kb on - strand at 21.913 kb on - strand at 21.935 kb on + strand at 21.935 kb on + strand at 21.935 kb on + strand at 21.935 kb on + strand at 21.935 kb on + strand at 21.936 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 18,418 - H281DRAFT_01904 0.89 -0.4 18,473 + -0.5 18,473 + +0.1 18,474 - +0.3 18,477 + +0.7 18,477 + +0.5 18,477 + -0.2 18,477 + -1.7 18,478 - +1.3 18,478 - +0.7 18,478 - +0.3 18,478 - +0.1 18,478 - -0.2 18,559 - -0.2 18,640 + H281DRAFT_01905 0.28 +0.8 18,641 - H281DRAFT_01905 0.28 -0.4 18,641 - H281DRAFT_01905 0.28 -0.0 18,729 + H281DRAFT_01905 0.78 -0.7 18,729 + H281DRAFT_01905 0.78 -1.1 18,729 + H281DRAFT_01905 0.78 -0.3 19,050 - H281DRAFT_01906 0.48 +0.6 19,153 + H281DRAFT_01906 0.66 +1.2 19,153 + H281DRAFT_01906 0.66 -0.7 19,154 - H281DRAFT_01906 0.66 +0.6 19,179 - -1.2 19,350 - -1.2 19,394 + +0.5 19,395 - +0.3 19,473 + -0.2 19,476 + -0.5 19,476 + -1.2 19,476 + -0.7 19,512 + H281DRAFT_01907 0.11 -2.0 19,513 - H281DRAFT_01907 0.11 +0.3 19,680 + H281DRAFT_01907 0.21 -1.2 19,717 - H281DRAFT_01907 0.23 -0.5 19,717 - H281DRAFT_01907 0.23 +0.2 19,736 - H281DRAFT_01907 0.24 +1.4 19,736 - H281DRAFT_01907 0.24 +0.4 19,789 + H281DRAFT_01907 0.28 +0.2 19,854 + H281DRAFT_01907 0.32 +0.3 19,855 - H281DRAFT_01907 0.32 -0.5 19,858 + H281DRAFT_01907 0.32 +0.2 19,858 - H281DRAFT_01907 0.32 +3.5 19,859 - H281DRAFT_01907 0.32 +0.3 19,859 - H281DRAFT_01907 0.32 -2.5 19,934 + H281DRAFT_01907 0.37 -1.2 19,935 - H281DRAFT_01907 0.37 +0.4 19,992 + H281DRAFT_01907 0.40 +0.8 20,013 + H281DRAFT_01907 0.42 +0.3 20,014 - H281DRAFT_01907 0.42 +0.6 20,016 - H281DRAFT_01907 0.42 +0.1 20,023 - H281DRAFT_01907 0.42 -0.2 20,025 + H281DRAFT_01907 0.42 -0.1 20,025 + H281DRAFT_01907 0.42 +0.6 20,025 + H281DRAFT_01907 0.42 +0.3 20,026 - H281DRAFT_01907 0.42 +2.3 20,026 - H281DRAFT_01907 0.42 -0.4 20,061 + H281DRAFT_01907 0.44 -1.5 20,062 - H281DRAFT_01907 0.45 +0.5 20,062 - H281DRAFT_01907 0.45 +0.4 20,388 + H281DRAFT_01907 0.65 -0.3 20,388 + H281DRAFT_01907 0.65 +0.3 20,399 + H281DRAFT_01907 0.65 -0.2 20,400 - H281DRAFT_01907 0.65 -1.2 20,400 - H281DRAFT_01907 0.65 -0.5 20,472 + H281DRAFT_01907 0.70 -0.9 20,598 + H281DRAFT_01907 0.77 -0.5 20,598 + H281DRAFT_01907 0.77 +0.0 20,599 - H281DRAFT_01907 0.78 -1.4 20,634 + H281DRAFT_01907 0.80 +1.5 20,637 + H281DRAFT_01907 0.80 +0.0 20,643 + H281DRAFT_01907 0.80 +0.8 20,644 - H281DRAFT_01907 0.80 +0.7 20,717 - H281DRAFT_01907 0.85 -0.6 20,736 + H281DRAFT_01907 0.86 -0.1 20,737 - H281DRAFT_01907 0.86 -0.8 20,737 - H281DRAFT_01907 0.86 +0.2 20,737 - H281DRAFT_01907 0.86 -0.6 20,837 + +0.9 20,838 - -0.8 20,886 + +0.5 20,886 + +0.9 20,887 - -1.8 21,052 - H281DRAFT_01908 0.11 -0.4 21,146 + H281DRAFT_01908 0.23 -2.0 21,147 - H281DRAFT_01908 0.23 -0.2 21,329 + H281DRAFT_01908 0.46 -1.6 21,345 - H281DRAFT_01908 0.48 +0.6 21,447 - +1.3 21,449 + H281DRAFT_01908 0.60 -0.1 21,449 + -2.8 21,450 - H281DRAFT_01908 0.60 -0.2 21,736 + -0.3 21,749 + -0.6 21,768 - +0.5 21,862 - -0.3 21,875 - +0.9 21,913 - -0.3 21,935 + +1.0 21,935 + +0.0 21,935 + -1.4 21,935 + -2.8 21,935 + -0.2 21,936 - +0.1
Or see this region's nucleotide sequence