Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01855 and H281DRAFT_01856 are separated by 96 nucleotides H281DRAFT_01856 and H281DRAFT_01857 are separated by 756 nucleotides
H281DRAFT_01855: H281DRAFT_01855 - starch phosphorylase, at 765,418 to 767,964
_01855
H281DRAFT_01856: H281DRAFT_01856 - xylulose-5-phosphate/fructose-6-phosphate phosphoketolase, at 768,061 to 770,457
_01856
H281DRAFT_01857: H281DRAFT_01857 - hypothetical protein, at 771,214 to 771,471
_01857
Position (kb) 768
769
770
771 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 767.121 kb on - strand, within H281DRAFT_01855 at 767.123 kb on + strand, within H281DRAFT_01855 at 767.124 kb on - strand, within H281DRAFT_01855 at 767.672 kb on + strand, within H281DRAFT_01855 at 767.736 kb on + strand at 767.737 kb on - strand at 767.768 kb on + strand at 768.009 kb on - strand at 768.135 kb on + strand at 768.136 kb on - strand at 768.977 kb on + strand, within H281DRAFT_01856 at 768.977 kb on + strand, within H281DRAFT_01856 at 768.977 kb on + strand, within H281DRAFT_01856 at 768.981 kb on + strand, within H281DRAFT_01856 at 768.982 kb on - strand, within H281DRAFT_01856 at 769.039 kb on - strand, within H281DRAFT_01856 at 769.162 kb on - strand, within H281DRAFT_01856 at 769.292 kb on + strand, within H281DRAFT_01856 at 769.440 kb on + strand, within H281DRAFT_01856 at 769.489 kb on - strand, within H281DRAFT_01856 at 769.489 kb on - strand, within H281DRAFT_01856 at 769.492 kb on + strand, within H281DRAFT_01856 at 769.751 kb on - strand, within H281DRAFT_01856 at 769.971 kb on - strand, within H281DRAFT_01856 at 769.988 kb on + strand, within H281DRAFT_01856 at 770.130 kb on - strand, within H281DRAFT_01856 at 770.144 kb on + strand, within H281DRAFT_01856 at 770.335 kb on + strand at 770.343 kb on - strand at 770.458 kb on - strand at 770.522 kb on + strand at 770.522 kb on + strand at 770.714 kb on + strand at 770.918 kb on - strand at 770.924 kb on + strand at 771.058 kb on + strand at 771.360 kb on + strand, within H281DRAFT_01857
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 767,121 - H281DRAFT_01855 0.67 -1.3 767,123 + H281DRAFT_01855 0.67 -0.1 767,124 - H281DRAFT_01855 0.67 +0.4 767,672 + H281DRAFT_01855 0.88 -1.6 767,736 + -3.4 767,737 - +0.8 767,768 + -0.5 768,009 - +0.2 768,135 + +0.5 768,136 - +2.1 768,977 + H281DRAFT_01856 0.38 -0.6 768,977 + H281DRAFT_01856 0.38 +0.8 768,977 + H281DRAFT_01856 0.38 +0.4 768,981 + H281DRAFT_01856 0.38 -0.4 768,982 - H281DRAFT_01856 0.38 +0.2 769,039 - H281DRAFT_01856 0.41 -0.0 769,162 - H281DRAFT_01856 0.46 -0.3 769,292 + H281DRAFT_01856 0.51 -1.4 769,440 + H281DRAFT_01856 0.58 -0.7 769,489 - H281DRAFT_01856 0.60 -0.3 769,489 - H281DRAFT_01856 0.60 -0.2 769,492 + H281DRAFT_01856 0.60 +0.1 769,751 - H281DRAFT_01856 0.71 -0.0 769,971 - H281DRAFT_01856 0.80 -0.1 769,988 + H281DRAFT_01856 0.80 +0.6 770,130 - H281DRAFT_01856 0.86 -1.4 770,144 + H281DRAFT_01856 0.87 -0.4 770,335 + -0.4 770,343 - +0.3 770,458 - -1.1 770,522 + -0.2 770,522 + +1.3 770,714 + -0.4 770,918 - +0.9 770,924 + +0.1 771,058 + +0.3 771,360 + H281DRAFT_01857 0.57 -2.1
Or see this region's nucleotide sequence