Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01496 and H281DRAFT_01497 are separated by 38 nucleotides H281DRAFT_01497 and H281DRAFT_01498 are separated by 102 nucleotides
H281DRAFT_01496: H281DRAFT_01496 - transcriptional regulator, LysR family, at 366,087 to 366,995
_01496
H281DRAFT_01497: H281DRAFT_01497 - Predicted oxidoreductase, at 367,034 to 367,909
_01497
H281DRAFT_01498: H281DRAFT_01498 - transcriptional regulator, LysR family, at 368,012 to 368,908
_01498
Position (kb) 367
368 Strain fitness (log2 ratio) -2
-1
0
1 at 366.875 kb on - strand, within H281DRAFT_01496 at 366.977 kb on + strand at 366.977 kb on + strand at 366.978 kb on - strand at 367.009 kb on + strand at 367.010 kb on - strand at 367.023 kb on - strand at 367.073 kb on + strand at 367.280 kb on + strand, within H281DRAFT_01497 at 367.284 kb on + strand, within H281DRAFT_01497 at 367.284 kb on + strand, within H281DRAFT_01497 at 367.284 kb on + strand, within H281DRAFT_01497 at 367.285 kb on - strand, within H281DRAFT_01497 at 367.285 kb on - strand, within H281DRAFT_01497 at 367.285 kb on - strand, within H281DRAFT_01497 at 367.574 kb on + strand, within H281DRAFT_01497 at 367.941 kb on + strand at 368.020 kb on - strand at 368.370 kb on + strand, within H281DRAFT_01498 at 368.370 kb on + strand, within H281DRAFT_01498 at 368.371 kb on - strand, within H281DRAFT_01498 at 368.526 kb on - strand, within H281DRAFT_01498 at 368.734 kb on - strand, within H281DRAFT_01498 at 368.835 kb on - strand at 368.838 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 366,875 - H281DRAFT_01496 0.87 -0.1 366,977 + -0.0 366,977 + -0.7 366,978 - +0.9 367,009 + +0.3 367,010 - +0.8 367,023 - +0.8 367,073 + +0.6 367,280 + H281DRAFT_01497 0.28 +0.5 367,284 + H281DRAFT_01497 0.29 +0.9 367,284 + H281DRAFT_01497 0.29 +0.1 367,284 + H281DRAFT_01497 0.29 -1.8 367,285 - H281DRAFT_01497 0.29 +0.3 367,285 - H281DRAFT_01497 0.29 -0.4 367,285 - H281DRAFT_01497 0.29 +1.3 367,574 + H281DRAFT_01497 0.62 -0.1 367,941 + -0.6 368,020 - -0.6 368,370 + H281DRAFT_01498 0.40 -0.6 368,370 + H281DRAFT_01498 0.40 -1.2 368,371 - H281DRAFT_01498 0.40 +0.7 368,526 - H281DRAFT_01498 0.57 +0.2 368,734 - H281DRAFT_01498 0.80 -0.4 368,835 - -0.0 368,838 - -1.4
Or see this region's nucleotide sequence