Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01484 and H281DRAFT_01485 are separated by 55 nucleotides H281DRAFT_01485 and H281DRAFT_01486 are separated by 107 nucleotides H281DRAFT_01486 and H281DRAFT_01487 are separated by 3 nucleotides
H281DRAFT_01484: H281DRAFT_01484 - transcriptional regulator, AraC family, at 353,747 to 354,739
_01484
H281DRAFT_01485: H281DRAFT_01485 - hypothetical protein, at 354,795 to 355,307
_01485
H281DRAFT_01486: H281DRAFT_01486 - hypothetical protein, at 355,415 to 355,915
_01486
H281DRAFT_01487: H281DRAFT_01487 - hypothetical protein, at 355,919 to 356,695
_01487
Position (kb) 354
355
356 Strain fitness (log2 ratio) -1
0
1
2 at 353.978 kb on - strand, within H281DRAFT_01484 at 354.036 kb on + strand, within H281DRAFT_01484 at 354.036 kb on + strand, within H281DRAFT_01484 at 354.037 kb on - strand, within H281DRAFT_01484 at 354.045 kb on - strand, within H281DRAFT_01484 at 354.068 kb on + strand at 354.725 kb on + strand at 354.725 kb on + strand at 354.725 kb on + strand at 354.726 kb on - strand at 354.726 kb on - strand at 354.726 kb on - strand at 354.726 kb on - strand at 354.828 kb on + strand at 355.001 kb on - strand, within H281DRAFT_01485 at 355.016 kb on - strand, within H281DRAFT_01485 at 355.043 kb on - strand, within H281DRAFT_01485 at 355.250 kb on + strand, within H281DRAFT_01485 at 355.253 kb on + strand, within H281DRAFT_01485 at 355.314 kb on + strand at 355.396 kb on - strand at 355.419 kb on + strand at 355.420 kb on - strand at 355.440 kb on + strand at 355.462 kb on - strand at 355.485 kb on + strand, within H281DRAFT_01486 at 355.609 kb on - strand, within H281DRAFT_01486 at 355.661 kb on - strand, within H281DRAFT_01486 at 355.681 kb on + strand, within H281DRAFT_01486 at 356.006 kb on - strand, within H281DRAFT_01487 at 356.068 kb on + strand, within H281DRAFT_01487 at 356.191 kb on - strand, within H281DRAFT_01487
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 353,978 - H281DRAFT_01484 0.23 -0.7 354,036 + H281DRAFT_01484 0.29 -0.8 354,036 + H281DRAFT_01484 0.29 +0.4 354,037 - H281DRAFT_01484 0.29 -0.4 354,045 - H281DRAFT_01484 0.30 -0.6 354,068 + +2.0 354,725 + +0.5 354,725 + -0.9 354,725 + +0.6 354,726 - -0.9 354,726 - -0.1 354,726 - -0.6 354,726 - +0.7 354,828 + -0.5 355,001 - H281DRAFT_01485 0.40 +1.1 355,016 - H281DRAFT_01485 0.43 +0.7 355,043 - H281DRAFT_01485 0.48 +0.5 355,250 + H281DRAFT_01485 0.89 +0.1 355,253 + H281DRAFT_01485 0.89 +1.3 355,314 + +0.6 355,396 - +0.7 355,419 + -0.3 355,420 - +0.2 355,440 + +0.1 355,462 - -0.5 355,485 + H281DRAFT_01486 0.14 +0.0 355,609 - H281DRAFT_01486 0.39 -0.8 355,661 - H281DRAFT_01486 0.49 -0.1 355,681 + H281DRAFT_01486 0.53 -0.2 356,006 - H281DRAFT_01487 0.11 +0.2 356,068 + H281DRAFT_01487 0.19 -1.1 356,191 - H281DRAFT_01487 0.35 -1.2
Or see this region's nucleotide sequence