Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01443

Experiment: Protocatechuic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01442 and H281DRAFT_01443 overlap by 4 nucleotidesH281DRAFT_01443 and H281DRAFT_01444 are separated by 92 nucleotides H281DRAFT_01442: H281DRAFT_01442 - efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family, at 301,790 to 303,328 _01442 H281DRAFT_01443: H281DRAFT_01443 - RND family efflux transporter, MFP subunit, at 303,325 to 304,548 _01443 H281DRAFT_01444: H281DRAFT_01444 - Multidrug efflux pump subunit AcrB, at 304,641 to 307,829 _01444 Position (kb) 303 304 305Strain fitness (log2 ratio) -1 0 1 2 3at 302.586 kb on - strand, within H281DRAFT_01442at 303.779 kb on + strand, within H281DRAFT_01443at 304.396 kb on + strand, within H281DRAFT_01443at 304.556 kb on - strandat 304.573 kb on - strandat 305.506 kb on + strand, within H281DRAFT_01444

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Per-strain Table

Position Strand Gene LocusTag Fraction Protocatechuic Acid (C)
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302,586 - H281DRAFT_01442 0.52 +0.1
303,779 + H281DRAFT_01443 0.37 -0.6
304,396 + H281DRAFT_01443 0.88 +2.9
304,556 - +1.3
304,573 - +1.6
305,506 + H281DRAFT_01444 0.27 +0.6

Or see this region's nucleotide sequence