Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01265 and H281DRAFT_01266 overlap by 8 nucleotides H281DRAFT_01266 and H281DRAFT_01267 are separated by 78 nucleotides H281DRAFT_01267 and H281DRAFT_01268 are separated by 191 nucleotides
H281DRAFT_01265: H281DRAFT_01265 - NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase, at 98,680 to 100,086
_01265
H281DRAFT_01266: H281DRAFT_01266 - sarcosine oxidase subunit beta, at 100,079 to 101,266
_01266
H281DRAFT_01267: H281DRAFT_01267 - Enamine deaminase RidA, house cleaning of reactive enamine intermediates, YjgF/YER057c/UK114 family, at 101,345 to 101,698
_01267
H281DRAFT_01268: H281DRAFT_01268 - RNA polymerase sigma-70 factor, ECF subfamily, at 101,890 to 102,771
_01268
Position (kb) 100
101
102 Strain fitness (log2 ratio) -2
-1
0
1 at 99.178 kb on + strand, within H281DRAFT_01265 at 99.179 kb on - strand, within H281DRAFT_01265 at 99.196 kb on + strand, within H281DRAFT_01265 at 99.196 kb on + strand, within H281DRAFT_01265 at 99.197 kb on - strand, within H281DRAFT_01265 at 99.819 kb on + strand, within H281DRAFT_01265 at 99.820 kb on - strand, within H281DRAFT_01265 at 100.030 kb on + strand at 100.530 kb on - strand, within H281DRAFT_01266 at 101.072 kb on + strand, within H281DRAFT_01266 at 101.072 kb on + strand, within H281DRAFT_01266 at 101.073 kb on - strand, within H281DRAFT_01266 at 101.075 kb on + strand, within H281DRAFT_01266 at 101.075 kb on + strand, within H281DRAFT_01266 at 101.075 kb on + strand, within H281DRAFT_01266 at 101.075 kb on + strand, within H281DRAFT_01266 at 101.109 kb on + strand, within H281DRAFT_01266 at 101.110 kb on - strand, within H281DRAFT_01266 at 101.264 kb on + strand at 101.381 kb on - strand, within H281DRAFT_01267 at 101.544 kb on + strand, within H281DRAFT_01267 at 101.544 kb on + strand, within H281DRAFT_01267 at 101.831 kb on + strand at 102.118 kb on + strand, within H281DRAFT_01268 at 102.121 kb on - strand, within H281DRAFT_01268
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 99,178 + H281DRAFT_01265 0.35 +0.5 99,179 - H281DRAFT_01265 0.35 -0.3 99,196 + H281DRAFT_01265 0.37 +0.7 99,196 + H281DRAFT_01265 0.37 +0.5 99,197 - H281DRAFT_01265 0.37 -1.5 99,819 + H281DRAFT_01265 0.81 +0.3 99,820 - H281DRAFT_01265 0.81 -0.6 100,030 + -0.8 100,530 - H281DRAFT_01266 0.38 +0.0 101,072 + H281DRAFT_01266 0.84 -0.4 101,072 + H281DRAFT_01266 0.84 +0.3 101,073 - H281DRAFT_01266 0.84 +1.0 101,075 + H281DRAFT_01266 0.84 -2.7 101,075 + H281DRAFT_01266 0.84 +0.2 101,075 + H281DRAFT_01266 0.84 -2.4 101,075 + H281DRAFT_01266 0.84 -0.4 101,109 + H281DRAFT_01266 0.87 -0.2 101,110 - H281DRAFT_01266 0.87 -0.9 101,264 + +0.7 101,381 - H281DRAFT_01267 0.10 +1.0 101,544 + H281DRAFT_01267 0.56 +0.6 101,544 + H281DRAFT_01267 0.56 -0.0 101,831 + +0.4 102,118 + H281DRAFT_01268 0.26 -0.3 102,121 - H281DRAFT_01268 0.26 -0.2
Or see this region's nucleotide sequence