Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01159

Experiment: Protocatechuic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01158 and H281DRAFT_01159 are separated by 63 nucleotidesH281DRAFT_01159 and H281DRAFT_01160 are separated by 84 nucleotides H281DRAFT_01158: H281DRAFT_01158 - 4-deoxy-L-threo-5-hexulose uronate isomerase, at 1,307,803 to 1,308,639 _01158 H281DRAFT_01159: H281DRAFT_01159 - 2-deoxy-D-gluconate 3-dehydrogenase, at 1,308,703 to 1,309,503 _01159 H281DRAFT_01160: H281DRAFT_01160 - transcriptional regulator, IclR family, at 1,309,588 to 1,310,463 _01160 Position (kb) 1308 1309 1310Strain fitness (log2 ratio) -2 -1 0 1at 1307.917 kb on + strand, within H281DRAFT_01158at 1307.917 kb on + strandat 1308.014 kb on - strand, within H281DRAFT_01158at 1308.295 kb on - strand, within H281DRAFT_01158at 1308.415 kb on + strand, within H281DRAFT_01158at 1308.416 kb on - strand, within H281DRAFT_01158at 1308.559 kb on + strandat 1308.657 kb on - strandat 1309.026 kb on - strand, within H281DRAFT_01159at 1309.213 kb on + strand, within H281DRAFT_01159at 1309.309 kb on + strand, within H281DRAFT_01159at 1309.310 kb on - strand, within H281DRAFT_01159at 1309.454 kb on - strandat 1309.454 kb on - strandat 1309.468 kb on - strandat 1309.644 kb on - strandat 1309.853 kb on - strand, within H281DRAFT_01160at 1310.002 kb on + strand, within H281DRAFT_01160at 1310.003 kb on - strand, within H281DRAFT_01160at 1310.366 kb on - strand, within H281DRAFT_01160

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Per-strain Table

Position Strand Gene LocusTag Fraction Protocatechuic Acid (C)
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1,307,917 + H281DRAFT_01158 0.14 +0.1
1,307,917 + -0.7
1,308,014 - H281DRAFT_01158 0.25 -1.1
1,308,295 - H281DRAFT_01158 0.59 +0.4
1,308,415 + H281DRAFT_01158 0.73 +0.1
1,308,416 - H281DRAFT_01158 0.73 +0.2
1,308,559 + -0.2
1,308,657 - +0.7
1,309,026 - H281DRAFT_01159 0.40 +0.4
1,309,213 + H281DRAFT_01159 0.64 +0.9
1,309,309 + H281DRAFT_01159 0.76 +0.1
1,309,310 - H281DRAFT_01159 0.76 +0.1
1,309,454 - +0.4
1,309,454 - -0.4
1,309,468 - -0.0
1,309,644 - +1.4
1,309,853 - H281DRAFT_01160 0.30 -2.2
1,310,002 + H281DRAFT_01160 0.47 +0.0
1,310,003 - H281DRAFT_01160 0.47 +0.3
1,310,366 - H281DRAFT_01160 0.89 +0.0

Or see this region's nucleotide sequence