Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01082

Experiment: Protocatechuic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01081 and H281DRAFT_01082 are separated by 64 nucleotidesH281DRAFT_01082 and H281DRAFT_01083 are separated by 169 nucleotidesH281DRAFT_01083 and H281DRAFT_01084 overlap by 28 nucleotides H281DRAFT_01081: H281DRAFT_01081 - L-glutamine synthetase, at 1,213,692 to 1,215,026 _01081 H281DRAFT_01082: H281DRAFT_01082 - putrescine aminotransferase, at 1,215,091 to 1,216,527 _01082 H281DRAFT_01083: H281DRAFT_01083 - hypothetical protein, at 1,216,697 to 1,217,158 _01083 H281DRAFT_01084: H281DRAFT_01084 - transcriptional regulator, LysR family, at 1,217,131 to 1,218,012 _01084 Position (kb) 1215 1216 1217Strain fitness (log2 ratio) -1 0 1at 1214.101 kb on - strand, within H281DRAFT_01081at 1214.593 kb on - strand, within H281DRAFT_01081at 1214.884 kb on + strand, within H281DRAFT_01081at 1214.964 kb on + strandat 1215.508 kb on - strand, within H281DRAFT_01082at 1215.732 kb on + strand, within H281DRAFT_01082at 1215.826 kb on - strand, within H281DRAFT_01082at 1215.878 kb on - strandat 1216.607 kb on - strandat 1216.738 kb on + strandat 1216.992 kb on + strand, within H281DRAFT_01083at 1216.993 kb on - strand, within H281DRAFT_01083at 1217.022 kb on - strand, within H281DRAFT_01083at 1217.022 kb on - strand, within H281DRAFT_01083

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Per-strain Table

Position Strand Gene LocusTag Fraction Protocatechuic Acid (C)
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1,214,101 - H281DRAFT_01081 0.31 +0.4
1,214,593 - H281DRAFT_01081 0.67 +0.2
1,214,884 + H281DRAFT_01081 0.89 -0.7
1,214,964 + +0.5
1,215,508 - H281DRAFT_01082 0.29 +1.1
1,215,732 + H281DRAFT_01082 0.45 +0.5
1,215,826 - H281DRAFT_01082 0.51 +0.2
1,215,878 - -0.7
1,216,607 - +1.4
1,216,738 + +0.4
1,216,992 + H281DRAFT_01083 0.64 +0.3
1,216,993 - H281DRAFT_01083 0.64 -0.3
1,217,022 - H281DRAFT_01083 0.70 -0.7
1,217,022 - H281DRAFT_01083 0.70 -0.2

Or see this region's nucleotide sequence