Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00996

Experiment: Protocatechuic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_00995 and H281DRAFT_00996 are separated by 194 nucleotidesH281DRAFT_00996 and H281DRAFT_00997 are separated by 41 nucleotides H281DRAFT_00995: H281DRAFT_00995 - transcriptional regulator, LysR family, at 1,117,372 to 1,118,373 _00995 H281DRAFT_00996: H281DRAFT_00996 - ChrR Cupin-like domain-containing protein, at 1,118,568 to 1,118,978 _00996 H281DRAFT_00997: H281DRAFT_00997 - amino acid/amide ABC transporter substrate-binding protein, HAAT family, at 1,119,020 to 1,120,171 _00997 Position (kb) 1118 1119Strain fitness (log2 ratio) -1 0 1at 1117.578 kb on + strand, within H281DRAFT_00995at 1117.579 kb on - strand, within H281DRAFT_00995at 1118.288 kb on - strandat 1118.529 kb on + strandat 1118.897 kb on + strand, within H281DRAFT_00996at 1119.342 kb on - strand, within H281DRAFT_00997at 1119.811 kb on + strand, within H281DRAFT_00997

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Per-strain Table

Position Strand Gene LocusTag Fraction Protocatechuic Acid (C)
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1,117,578 + H281DRAFT_00995 0.21 +0.4
1,117,579 - H281DRAFT_00995 0.21 -0.5
1,118,288 - +0.1
1,118,529 + -0.3
1,118,897 + H281DRAFT_00996 0.80 +0.8
1,119,342 - H281DRAFT_00997 0.28 +0.1
1,119,811 + H281DRAFT_00997 0.69 +1.6

Or see this region's nucleotide sequence