Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00847

Experiment: Protocatechuic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_00846 and H281DRAFT_00847 are separated by 130 nucleotidesH281DRAFT_00847 and H281DRAFT_00848 are separated by 38 nucleotides H281DRAFT_00846: H281DRAFT_00846 - 23S rRNA m(5)U-1939 methyltransferase, at 935,026 to 936,456 _00846 H281DRAFT_00847: H281DRAFT_00847 - Beta-barrel assembly machine subunit BamD, at 936,587 to 937,447 _00847 H281DRAFT_00848: H281DRAFT_00848 - ribosomal large subunit pseudouridine synthase D (EC 5.4.99.-), at 937,486 to 938,763 _00848 Position (kb) 936 937 938Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 935.589 kb on + strand, within H281DRAFT_00846at 935.870 kb on - strand, within H281DRAFT_00846at 935.870 kb on - strand, within H281DRAFT_00846at 935.885 kb on - strand, within H281DRAFT_00846at 935.967 kb on - strand, within H281DRAFT_00846at 936.062 kb on + strand, within H281DRAFT_00846at 936.062 kb on + strand, within H281DRAFT_00846at 936.062 kb on + strand, within H281DRAFT_00846at 936.063 kb on - strand, within H281DRAFT_00846at 936.063 kb on - strand, within H281DRAFT_00846at 936.063 kb on - strand, within H281DRAFT_00846at 936.303 kb on + strand, within H281DRAFT_00846at 936.304 kb on - strand, within H281DRAFT_00846at 936.304 kb on - strand, within H281DRAFT_00846at 936.310 kb on + strand, within H281DRAFT_00846at 936.310 kb on + strand, within H281DRAFT_00846at 936.311 kb on - strand, within H281DRAFT_00846at 936.491 kb on + strandat 936.492 kb on - strandat 936.536 kb on + strandat 936.536 kb on + strandat 936.536 kb on + strandat 936.536 kb on + strandat 936.536 kb on + strandat 936.537 kb on - strandat 936.588 kb on + strandat 936.589 kb on - strandat 936.639 kb on + strandat 937.464 kb on - strandat 937.501 kb on - strandat 937.544 kb on - strandat 937.544 kb on - strandat 937.544 kb on - strandat 937.545 kb on + strandat 937.550 kb on + strandat 937.550 kb on + strandat 937.551 kb on - strandat 938.440 kb on + strand, within H281DRAFT_00848at 938.441 kb on - strand, within H281DRAFT_00848

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Per-strain Table

Position Strand Gene LocusTag Fraction Protocatechuic Acid (C)
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935,589 + H281DRAFT_00846 0.39 -0.1
935,870 - H281DRAFT_00846 0.59 -0.1
935,870 - H281DRAFT_00846 0.59 -0.5
935,885 - H281DRAFT_00846 0.60 -0.1
935,967 - H281DRAFT_00846 0.66 +0.5
936,062 + H281DRAFT_00846 0.72 -0.6
936,062 + H281DRAFT_00846 0.72 +0.2
936,062 + H281DRAFT_00846 0.72 -2.5
936,063 - H281DRAFT_00846 0.72 +1.3
936,063 - H281DRAFT_00846 0.72 +0.6
936,063 - H281DRAFT_00846 0.72 +0.9
936,303 + H281DRAFT_00846 0.89 +0.7
936,304 - H281DRAFT_00846 0.89 -0.8
936,304 - H281DRAFT_00846 0.89 -0.5
936,310 + H281DRAFT_00846 0.90 +0.4
936,310 + H281DRAFT_00846 0.90 +0.3
936,311 - H281DRAFT_00846 0.90 +1.6
936,491 + +0.2
936,492 - +0.3
936,536 + +1.2
936,536 + -0.5
936,536 + -0.1
936,536 + +0.0
936,536 + -0.0
936,537 - -0.7
936,588 + +0.1
936,589 - +0.5
936,639 + +0.8
937,464 - -0.8
937,501 - +0.1
937,544 - -4.7
937,544 - -1.7
937,544 - -0.7
937,545 + -1.0
937,550 + +0.6
937,550 + -0.2
937,551 - +0.7
938,440 + H281DRAFT_00848 0.75 -1.8
938,441 - H281DRAFT_00848 0.75 -1.1

Or see this region's nucleotide sequence