Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_00774 and H281DRAFT_00775 are separated by 192 nucleotides H281DRAFT_00775 and H281DRAFT_00776 are separated by 110 nucleotides H281DRAFT_00776 and H281DRAFT_00777 are separated by 107 nucleotides
H281DRAFT_00774: H281DRAFT_00774 - Nucleotide-binding universal stress protein, UspA family, at 861,486 to 861,950
_00774
H281DRAFT_00775: H281DRAFT_00775 - Protein of unknown function (DUF2939), at 862,143 to 862,826
_00775
H281DRAFT_00776: H281DRAFT_00776 - hypothetical protein, at 862,937 to 863,293
_00776
H281DRAFT_00777: H281DRAFT_00777 - SOS-response transcriptional repressor, LexA, at 863,401 to 864,051
_00777
Position (kb) 862
863
864 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 862.063 kb on - strand at 862.210 kb on + strand at 862.237 kb on + strand, within H281DRAFT_00775 at 862.648 kb on + strand, within H281DRAFT_00775 at 862.648 kb on + strand, within H281DRAFT_00775 at 862.649 kb on - strand, within H281DRAFT_00775 at 862.709 kb on + strand, within H281DRAFT_00775 at 862.711 kb on + strand, within H281DRAFT_00775 at 862.711 kb on + strand, within H281DRAFT_00775 at 862.723 kb on + strand, within H281DRAFT_00775 at 862.723 kb on + strand, within H281DRAFT_00775 at 862.724 kb on - strand, within H281DRAFT_00775 at 862.724 kb on - strand, within H281DRAFT_00775 at 862.773 kb on - strand at 863.050 kb on - strand, within H281DRAFT_00776 at 863.050 kb on - strand, within H281DRAFT_00776 at 863.050 kb on - strand, within H281DRAFT_00776 at 863.225 kb on + strand, within H281DRAFT_00776 at 863.225 kb on + strand, within H281DRAFT_00776 at 863.676 kb on - strand, within H281DRAFT_00777 at 863.715 kb on - strand, within H281DRAFT_00777 at 863.728 kb on - strand at 864.122 kb on - strand at 864.156 kb on - strand at 864.251 kb on - strand at 864.271 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 862,063 - -0.4 862,210 + +0.7 862,237 + H281DRAFT_00775 0.14 +0.6 862,648 + H281DRAFT_00775 0.74 -0.1 862,648 + H281DRAFT_00775 0.74 +0.6 862,649 - H281DRAFT_00775 0.74 +0.5 862,709 + H281DRAFT_00775 0.83 +0.2 862,711 + H281DRAFT_00775 0.83 -0.4 862,711 + H281DRAFT_00775 0.83 -1.0 862,723 + H281DRAFT_00775 0.85 -0.9 862,723 + H281DRAFT_00775 0.85 +1.2 862,724 - H281DRAFT_00775 0.85 +0.6 862,724 - H281DRAFT_00775 0.85 -1.2 862,773 - +2.3 863,050 - H281DRAFT_00776 0.32 -0.0 863,050 - H281DRAFT_00776 0.32 +1.5 863,050 - H281DRAFT_00776 0.32 +0.1 863,225 + H281DRAFT_00776 0.81 +0.6 863,225 + H281DRAFT_00776 0.81 +1.3 863,676 - H281DRAFT_00777 0.42 -0.9 863,715 - H281DRAFT_00777 0.48 +0.6 863,728 - -2.9 864,122 - -0.4 864,156 - -0.7 864,251 - +0.5 864,271 - +0.2
Or see this region's nucleotide sequence