Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00698

Experiment: Protocatechuic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_00697 and H281DRAFT_00698 are separated by 387 nucleotidesH281DRAFT_00698 and H281DRAFT_00699 are separated by 543 nucleotides H281DRAFT_00697: H281DRAFT_00697 - FAD/FMN-containing dehydrogenase, at 778,377 to 779,786 _00697 H281DRAFT_00698: H281DRAFT_00698 - transcriptional regulator, TetR family, at 780,174 to 780,929 _00698 H281DRAFT_00699: H281DRAFT_00699 - RND family efflux transporter, MFP subunit, at 781,473 to 782,552 _00699 Position (kb) 780 781Strain fitness (log2 ratio) -1 0 1at 779.218 kb on - strand, within H281DRAFT_00697at 779.218 kb on - strand, within H281DRAFT_00697at 779.218 kb on - strand, within H281DRAFT_00697at 779.248 kb on - strand, within H281DRAFT_00697at 779.625 kb on - strand, within H281DRAFT_00697at 779.784 kb on + strandat 780.099 kb on + strandat 780.151 kb on + strandat 780.567 kb on - strand, within H281DRAFT_00698at 781.045 kb on - strandat 781.147 kb on - strandat 781.603 kb on + strand, within H281DRAFT_00699at 781.872 kb on + strand, within H281DRAFT_00699

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Per-strain Table

Position Strand Gene LocusTag Fraction Protocatechuic Acid (C)
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779,218 - H281DRAFT_00697 0.60 -0.9
779,218 - H281DRAFT_00697 0.60 -0.5
779,218 - H281DRAFT_00697 0.60 -1.3
779,248 - H281DRAFT_00697 0.62 -0.9
779,625 - H281DRAFT_00697 0.89 -0.7
779,784 + -0.2
780,099 + +0.2
780,151 + -0.6
780,567 - H281DRAFT_00698 0.52 -0.2
781,045 - +1.0
781,147 - +0.5
781,603 + H281DRAFT_00699 0.12 +0.0
781,872 + H281DRAFT_00699 0.37 -0.7

Or see this region's nucleotide sequence