Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_00455 and H281DRAFT_00456 are separated by 86 nucleotides H281DRAFT_00456 and H281DRAFT_00457 are separated by 191 nucleotides H281DRAFT_00457 and H281DRAFT_00458 are separated by 113 nucleotides H281DRAFT_00458 and H281DRAFT_00459 are separated by 106 nucleotides
H281DRAFT_00455: H281DRAFT_00455 - prolyl oligopeptidase, at 506,502 to 508,682
_00455
H281DRAFT_00456: H281DRAFT_00456 - Exodeoxyribonuclease III, at 508,769 to 509,545
_00456
H281DRAFT_00457: H281DRAFT_00457 - hypothetical protein, at 509,737 to 510,024
_00457
H281DRAFT_00458: H281DRAFT_00458 - tRNA_Met_CAT, at 510,138 to 510,214
_00458
H281DRAFT_00459: H281DRAFT_00459 - aspartate racemase, at 510,321 to 511,019
_00459
Position (kb) 508
509
510 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 507.903 kb on + strand, within H281DRAFT_00455 at 507.903 kb on + strand, within H281DRAFT_00455 at 507.903 kb on + strand, within H281DRAFT_00455 at 508.039 kb on - strand, within H281DRAFT_00455 at 508.039 kb on - strand, within H281DRAFT_00455 at 508.039 kb on - strand, within H281DRAFT_00455 at 508.084 kb on - strand, within H281DRAFT_00455 at 508.654 kb on + strand at 508.654 kb on + strand at 508.883 kb on - strand, within H281DRAFT_00456 at 508.883 kb on - strand, within H281DRAFT_00456 at 509.098 kb on - strand, within H281DRAFT_00456 at 509.181 kb on + strand, within H281DRAFT_00456 at 509.237 kb on - strand, within H281DRAFT_00456 at 509.237 kb on - strand, within H281DRAFT_00456 at 509.296 kb on + strand, within H281DRAFT_00456 at 509.361 kb on + strand, within H281DRAFT_00456 at 509.362 kb on - strand, within H281DRAFT_00456 at 509.585 kb on - strand at 509.594 kb on + strand at 509.675 kb on + strand at 509.676 kb on - strand at 509.678 kb on - strand at 509.761 kb on + strand at 509.763 kb on + strand at 509.842 kb on + strand, within H281DRAFT_00457 at 510.066 kb on + strand at 510.102 kb on + strand at 510.102 kb on + strand at 510.103 kb on - strand at 510.108 kb on + strand at 510.108 kb on + strand at 510.109 kb on - strand at 510.109 kb on - strand at 510.119 kb on + strand at 510.119 kb on + strand at 510.120 kb on - strand at 510.120 kb on - strand at 510.263 kb on + strand at 510.525 kb on + strand, within H281DRAFT_00459 at 510.525 kb on + strand, within H281DRAFT_00459 at 510.526 kb on - strand, within H281DRAFT_00459 at 510.535 kb on + strand, within H281DRAFT_00459
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 507,903 + H281DRAFT_00455 0.64 +0.1 507,903 + H281DRAFT_00455 0.64 +0.4 507,903 + H281DRAFT_00455 0.64 +0.5 508,039 - H281DRAFT_00455 0.70 +0.4 508,039 - H281DRAFT_00455 0.70 -3.4 508,039 - H281DRAFT_00455 0.70 +0.2 508,084 - H281DRAFT_00455 0.73 -0.4 508,654 + -0.2 508,654 + +0.9 508,883 - H281DRAFT_00456 0.15 -1.9 508,883 - H281DRAFT_00456 0.15 -0.9 509,098 - H281DRAFT_00456 0.42 +0.2 509,181 + H281DRAFT_00456 0.53 -0.0 509,237 - H281DRAFT_00456 0.60 +0.2 509,237 - H281DRAFT_00456 0.60 +0.3 509,296 + H281DRAFT_00456 0.68 -0.3 509,361 + H281DRAFT_00456 0.76 +0.3 509,362 - H281DRAFT_00456 0.76 +0.0 509,585 - -0.2 509,594 + +0.5 509,675 + -0.6 509,676 - -0.0 509,678 - +0.5 509,761 + +0.1 509,763 + +0.5 509,842 + H281DRAFT_00457 0.36 +0.3 510,066 + +1.1 510,102 + -0.1 510,102 + -0.8 510,103 - +0.2 510,108 + +0.2 510,108 + -0.7 510,109 - +1.0 510,109 - -1.2 510,119 + +0.3 510,119 + -0.8 510,120 - -0.3 510,120 - -0.4 510,263 + -0.2 510,525 + H281DRAFT_00459 0.29 +0.0 510,525 + H281DRAFT_00459 0.29 -0.4 510,526 - H281DRAFT_00459 0.29 -0.4 510,535 + H281DRAFT_00459 0.31 -0.1
Or see this region's nucleotide sequence