Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_00218 and H281DRAFT_00219 are separated by 148 nucleotides H281DRAFT_00219 and H281DRAFT_00220 are separated by 231 nucleotides H281DRAFT_00220 and H281DRAFT_00221 are separated by 617 nucleotides
H281DRAFT_00218: H281DRAFT_00218 - NAD+ synthase (glutamine-hydrolysing), at 236,890 to 238,635
_00218
H281DRAFT_00219: H281DRAFT_00219 - nitrogen regulatory protein P-II family, at 238,784 to 239,122
_00219
H281DRAFT_00220: H281DRAFT_00220 - Outer membrane protein (porin), at 239,354 to 240,475
_00220
H281DRAFT_00221: H281DRAFT_00221 - amino acid ABC transporter ATP-binding protein, PAAT family, at 241,093 to 241,872
_00221
Position (kb) 239
240
241 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 238.406 kb on - strand, within H281DRAFT_00218 at 238.435 kb on + strand, within H281DRAFT_00218 at 238.435 kb on + strand, within H281DRAFT_00218 at 238.435 kb on + strand, within H281DRAFT_00218 at 238.436 kb on - strand, within H281DRAFT_00218 at 238.436 kb on - strand, within H281DRAFT_00218 at 238.531 kb on + strand at 238.532 kb on - strand at 238.533 kb on + strand at 238.728 kb on - strand at 238.919 kb on + strand, within H281DRAFT_00219 at 238.919 kb on + strand, within H281DRAFT_00219 at 238.934 kb on + strand, within H281DRAFT_00219 at 238.935 kb on - strand, within H281DRAFT_00219 at 238.935 kb on - strand, within H281DRAFT_00219 at 238.935 kb on - strand, within H281DRAFT_00219 at 239.121 kb on - strand at 239.245 kb on + strand at 239.422 kb on - strand at 239.425 kb on + strand at 239.553 kb on + strand, within H281DRAFT_00220 at 239.572 kb on - strand, within H281DRAFT_00220 at 239.613 kb on + strand, within H281DRAFT_00220 at 239.613 kb on + strand, within H281DRAFT_00220 at 239.614 kb on - strand, within H281DRAFT_00220 at 239.722 kb on + strand, within H281DRAFT_00220 at 239.736 kb on + strand, within H281DRAFT_00220 at 239.850 kb on + strand, within H281DRAFT_00220 at 239.855 kb on - strand, within H281DRAFT_00220 at 239.883 kb on + strand, within H281DRAFT_00220 at 239.884 kb on - strand, within H281DRAFT_00220 at 239.884 kb on - strand, within H281DRAFT_00220 at 239.971 kb on - strand, within H281DRAFT_00220 at 240.004 kb on - strand, within H281DRAFT_00220 at 240.136 kb on + strand, within H281DRAFT_00220 at 240.136 kb on + strand, within H281DRAFT_00220 at 240.136 kb on + strand, within H281DRAFT_00220 at 240.137 kb on - strand, within H281DRAFT_00220 at 240.145 kb on + strand, within H281DRAFT_00220 at 240.369 kb on - strand at 240.369 kb on - strand at 240.373 kb on - strand at 240.399 kb on + strand at 240.399 kb on + strand at 240.399 kb on + strand at 240.400 kb on - strand at 240.512 kb on + strand at 240.581 kb on + strand at 240.581 kb on + strand at 240.711 kb on - strand at 240.724 kb on + strand at 240.886 kb on + strand at 240.912 kb on - strand at 240.912 kb on - strand at 240.942 kb on - strand at 241.007 kb on + strand at 241.086 kb on - strand at 241.086 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 238,406 - H281DRAFT_00218 0.87 -0.4 238,435 + H281DRAFT_00218 0.88 +0.1 238,435 + H281DRAFT_00218 0.88 +0.3 238,435 + H281DRAFT_00218 0.88 -0.2 238,436 - H281DRAFT_00218 0.89 +0.6 238,436 - H281DRAFT_00218 0.89 -0.4 238,531 + -1.6 238,532 - -0.8 238,533 + +0.3 238,728 - +0.4 238,919 + H281DRAFT_00219 0.40 -1.8 238,919 + H281DRAFT_00219 0.40 -0.9 238,934 + H281DRAFT_00219 0.44 -1.0 238,935 - H281DRAFT_00219 0.45 -1.1 238,935 - H281DRAFT_00219 0.45 -3.4 238,935 - H281DRAFT_00219 0.45 -1.2 239,121 - +0.1 239,245 + +1.3 239,422 - +0.8 239,425 + -0.1 239,553 + H281DRAFT_00220 0.18 -0.9 239,572 - H281DRAFT_00220 0.19 -0.4 239,613 + H281DRAFT_00220 0.23 -0.3 239,613 + H281DRAFT_00220 0.23 -0.9 239,614 - H281DRAFT_00220 0.23 -0.8 239,722 + H281DRAFT_00220 0.33 -0.3 239,736 + H281DRAFT_00220 0.34 -0.7 239,850 + H281DRAFT_00220 0.44 +0.2 239,855 - H281DRAFT_00220 0.45 -0.0 239,883 + H281DRAFT_00220 0.47 +0.9 239,884 - H281DRAFT_00220 0.47 -0.4 239,884 - H281DRAFT_00220 0.47 +1.0 239,971 - H281DRAFT_00220 0.55 -0.5 240,004 - H281DRAFT_00220 0.58 +1.1 240,136 + H281DRAFT_00220 0.70 -0.9 240,136 + H281DRAFT_00220 0.70 -1.2 240,136 + H281DRAFT_00220 0.70 +0.3 240,137 - H281DRAFT_00220 0.70 -2.4 240,145 + H281DRAFT_00220 0.70 +0.4 240,369 - +0.2 240,369 - +0.7 240,373 - -0.8 240,399 + +0.3 240,399 + +0.8 240,399 + -0.1 240,400 - -0.2 240,512 + +1.1 240,581 + -0.5 240,581 + +0.1 240,711 - +0.9 240,724 + +1.1 240,886 + +1.9 240,912 - +1.1 240,912 - -1.9 240,942 - +0.8 241,007 + +0.9 241,086 - -0.1 241,086 - -0.6
Or see this region's nucleotide sequence