Experiment: Protocatechuic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_00193 and H281DRAFT_00194 are separated by 187 nucleotides H281DRAFT_00194 and H281DRAFT_00195 are separated by 195 nucleotides
H281DRAFT_00193: H281DRAFT_00193 - protein TonB, at 207,246 to 207,785
_00193
H281DRAFT_00194: H281DRAFT_00194 - argininosuccinate lyase, at 207,973 to 209,379
_00194
H281DRAFT_00195: H281DRAFT_00195 - transcriptional regulator, XRE family, at 209,575 to 210,399
_00195
Position (kb) 207
208
209
210 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 206.996 kb on - strand at 206.996 kb on - strand at 207.191 kb on - strand at 207.443 kb on - strand, within H281DRAFT_00193 at 207.534 kb on + strand, within H281DRAFT_00193 at 207.535 kb on - strand, within H281DRAFT_00193 at 207.535 kb on - strand, within H281DRAFT_00193 at 207.538 kb on + strand, within H281DRAFT_00193 at 207.538 kb on + strand, within H281DRAFT_00193 at 207.539 kb on - strand, within H281DRAFT_00193 at 207.797 kb on - strand at 207.816 kb on + strand at 207.817 kb on - strand at 207.873 kb on + strand at 208.347 kb on + strand, within H281DRAFT_00194 at 208.410 kb on - strand, within H281DRAFT_00194 at 208.589 kb on - strand, within H281DRAFT_00194 at 209.173 kb on - strand, within H281DRAFT_00194 at 209.299 kb on - strand at 209.299 kb on - strand at 209.300 kb on + strand at 209.404 kb on + strand at 209.404 kb on + strand at 209.405 kb on - strand at 209.405 kb on - strand at 209.405 kb on - strand at 209.415 kb on + strand at 209.464 kb on - strand at 209.632 kb on - strand at 209.883 kb on + strand, within H281DRAFT_00195 at 209.883 kb on + strand, within H281DRAFT_00195 at 209.987 kb on + strand, within H281DRAFT_00195 at 209.987 kb on + strand, within H281DRAFT_00195 at 209.987 kb on + strand, within H281DRAFT_00195 at 209.988 kb on - strand, within H281DRAFT_00195 at 209.988 kb on - strand, within H281DRAFT_00195 at 210.001 kb on + strand, within H281DRAFT_00195 at 210.096 kb on - strand, within H281DRAFT_00195 at 210.191 kb on + strand, within H281DRAFT_00195 at 210.191 kb on + strand, within H281DRAFT_00195 at 210.192 kb on - strand, within H281DRAFT_00195 at 210.192 kb on - strand, within H281DRAFT_00195 at 210.192 kb on - strand, within H281DRAFT_00195
Per-strain Table
Position Strand Gene LocusTag Fraction Protocatechuic Acid (C) remove 206,996 - -0.1 206,996 - +0.3 207,191 - +1.4 207,443 - H281DRAFT_00193 0.36 +0.0 207,534 + H281DRAFT_00193 0.53 -0.0 207,535 - H281DRAFT_00193 0.54 +1.1 207,535 - H281DRAFT_00193 0.54 -1.5 207,538 + H281DRAFT_00193 0.54 -0.3 207,538 + H281DRAFT_00193 0.54 +0.5 207,539 - H281DRAFT_00193 0.54 -1.5 207,797 - -0.1 207,816 + -2.1 207,817 - -1.3 207,873 + +1.0 208,347 + H281DRAFT_00194 0.27 -1.6 208,410 - H281DRAFT_00194 0.31 -0.0 208,589 - H281DRAFT_00194 0.44 -3.1 209,173 - H281DRAFT_00194 0.85 -3.1 209,299 - -3.0 209,299 - -2.9 209,300 + -1.0 209,404 + -2.6 209,404 + -1.9 209,405 - -0.2 209,405 - +0.4 209,405 - +0.6 209,415 + -0.0 209,464 - -0.6 209,632 - -3.1 209,883 + H281DRAFT_00195 0.37 -1.4 209,883 + H281DRAFT_00195 0.37 -5.1 209,987 + H281DRAFT_00195 0.50 -2.3 209,987 + H281DRAFT_00195 0.50 -1.7 209,987 + H281DRAFT_00195 0.50 -2.5 209,988 - H281DRAFT_00195 0.50 -2.1 209,988 - H281DRAFT_00195 0.50 -2.5 210,001 + H281DRAFT_00195 0.52 -1.6 210,096 - H281DRAFT_00195 0.63 -2.2 210,191 + H281DRAFT_00195 0.75 -0.0 210,191 + H281DRAFT_00195 0.75 -1.2 210,192 - H281DRAFT_00195 0.75 -2.3 210,192 - H281DRAFT_00195 0.75 -3.3 210,192 - H281DRAFT_00195 0.75 -0.0
Or see this region's nucleotide sequence