Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00046

Experiment: Protocatechuic Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_00045 and H281DRAFT_00046 are separated by 178 nucleotidesH281DRAFT_00046 and H281DRAFT_00047 are separated by 203 nucleotides H281DRAFT_00045: H281DRAFT_00045 - hypothetical protein, at 48,285 to 48,983 _00045 H281DRAFT_00046: H281DRAFT_00046 - Predicted periplasmic or secreted lipoprotein, at 49,162 to 49,542 _00046 H281DRAFT_00047: H281DRAFT_00047 - protease I, at 49,746 to 50,327 _00047 Position (kb) 49 50Strain fitness (log2 ratio) -2 -1 0 1 2at 48.302 kb on - strandat 48.307 kb on + strandat 48.308 kb on - strandat 48.308 kb on - strandat 48.357 kb on - strand, within H281DRAFT_00045at 48.481 kb on - strand, within H281DRAFT_00045at 48.687 kb on - strand, within H281DRAFT_00045at 48.764 kb on - strand, within H281DRAFT_00045at 48.796 kb on + strand, within H281DRAFT_00045at 48.796 kb on + strand, within H281DRAFT_00045at 48.797 kb on - strand, within H281DRAFT_00045at 48.838 kb on + strand, within H281DRAFT_00045at 48.838 kb on + strand, within H281DRAFT_00045at 48.839 kb on - strand, within H281DRAFT_00045at 48.917 kb on - strandat 49.020 kb on - strandat 49.043 kb on + strandat 49.044 kb on - strandat 49.144 kb on + strandat 49.161 kb on - strandat 49.356 kb on + strand, within H281DRAFT_00046at 49.541 kb on - strandat 49.739 kb on + strandat 49.739 kb on + strandat 49.745 kb on + strandat 49.746 kb on - strandat 49.848 kb on - strand, within H281DRAFT_00047at 49.883 kb on - strand, within H281DRAFT_00047at 49.920 kb on + strand, within H281DRAFT_00047at 49.920 kb on + strand, within H281DRAFT_00047at 49.921 kb on - strand, within H281DRAFT_00047at 50.026 kb on - strand, within H281DRAFT_00047at 50.116 kb on + strand, within H281DRAFT_00047at 50.326 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Protocatechuic Acid (C)
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48,302 - +2.2
48,307 + +0.1
48,308 - -1.7
48,308 - -1.5
48,357 - H281DRAFT_00045 0.10 -0.1
48,481 - H281DRAFT_00045 0.28 +0.3
48,687 - H281DRAFT_00045 0.58 -1.0
48,764 - H281DRAFT_00045 0.69 -0.2
48,796 + H281DRAFT_00045 0.73 -0.6
48,796 + H281DRAFT_00045 0.73 +1.2
48,797 - H281DRAFT_00045 0.73 -0.4
48,838 + H281DRAFT_00045 0.79 -1.8
48,838 + H281DRAFT_00045 0.79 +0.4
48,839 - H281DRAFT_00045 0.79 +0.0
48,917 - +0.5
49,020 - +0.1
49,043 + +1.0
49,044 - +0.5
49,144 + -0.0
49,161 - +0.5
49,356 + H281DRAFT_00046 0.51 +0.7
49,541 - +0.0
49,739 + -0.1
49,739 + +1.1
49,745 + -0.4
49,746 - -0.1
49,848 - H281DRAFT_00047 0.18 -1.6
49,883 - H281DRAFT_00047 0.24 -0.8
49,920 + H281DRAFT_00047 0.30 -0.3
49,920 + H281DRAFT_00047 0.30 -1.6
49,921 - H281DRAFT_00047 0.30 -0.7
50,026 - H281DRAFT_00047 0.48 -2.6
50,116 + H281DRAFT_00047 0.64 +1.3
50,326 - +2.4

Or see this region's nucleotide sequence