Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03465

Experiment: PYE 0.5x 4C survival rep1 58 days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE 0.5x 4C survival rep1 58 days
3,627,129	-		CCNA_03463	0.64	-0.5
3,627,130	+		CCNA_03463	0.64	-1.2
3,627,153	+		CCNA_03463	0.65	+2.1
3,627,168	+		CCNA_03463	0.66	-1.7
3,627,238	+		CCNA_03463	0.72	-2.7
3,627,246	-		CCNA_03463	0.72	-2.0
3,627,246	-		CCNA_03463	0.72	-1.3
3,627,246	-		CCNA_03463	0.72	-3.0
3,627,248	+		CCNA_03463	0.72	-2.7
3,627,248	+		CCNA_03463	0.72	-1.3
3,627,256	-		CCNA_03463	0.73	-0.8
3,627,256	-		CCNA_03463	0.73	-0.6
3,627,292	-		CCNA_03463	0.76	+0.1
3,627,294	-		CCNA_03463	0.76	-1.2
3,627,355	-		CCNA_03463	0.80	-1.4
3,627,473	+		CCNA_03463	0.89	+2.1
3,627,564	-				-3.1
3,627,564	-				-2.4
3,627,600	-				-1.8
3,627,607	-				-3.7
3,627,607	-				-3.1
3,627,612	-				-1.1
3,627,699	+				-1.9
3,627,707	-				+0.8
3,627,707	-				+1.3
3,627,743	-				+1.2
3,627,743	-				+1.2
3,627,743	-				+0.8
3,627,939	-		CCNA_03464	0.55	-1.9
3,627,950	-		CCNA_03464	0.58	-1.5
3,627,958	+		CCNA_03464	0.60	-1.3
3,627,959	-		CCNA_03464	0.60	-2.1
3,627,966	-		CCNA_03464	0.62	-1.4
3,627,976	+		CCNA_03464	0.65	-3.0
3,627,976	+		CCNA_03464	0.65	-2.6
3,627,976	+		CCNA_03464	0.65	-3.3
3,628,080	+				-1.5
3,628,088	-				-1.1
3,628,088	-				-2.0
3,628,120	+				-0.3
3,628,120	+				+0.5
3,628,122	-				-0.8
3,628,129	-				+0.8
3,628,210	-				-2.5
3,628,217	-				-0.8
3,628,355	+		CCNA_03465	0.21	-1.3
3,628,471	+		CCNA_03465	0.31	-1.3
3,628,471	+		CCNA_03465	0.31	-0.3
3,628,479	-		CCNA_03465	0.32	-1.3
3,628,479	-		CCNA_03465	0.32	-1.2
3,628,479	-		CCNA_03465	0.32	-2.1
3,628,503	+		CCNA_03465	0.34	-1.1
3,628,507	-		CCNA_03465	0.34	-2.1
3,628,507	-		CCNA_03465	0.34	-1.1
3,628,511	-		CCNA_03465	0.34	-3.1
3,628,517	+				-1.8
3,628,574	+		CCNA_03465	0.40	-1.8
3,628,582	-		CCNA_03465	0.41	-1.1
3,628,601	+		CCNA_03465	0.42	+2.1
3,628,603	+		CCNA_03465	0.43	-0.7
3,628,619	-		CCNA_03465	0.44	-0.7
3,628,641	-		CCNA_03465	0.46	-1.0
3,628,658	-		CCNA_03465	0.47	-0.9
3,628,660	+		CCNA_03465	0.48	-1.6
3,628,664	-		CCNA_03465	0.48	-2.5
3,628,668	-		CCNA_03465	0.48	-1.2
3,628,668	-		CCNA_03465	0.48	+0.3
3,628,668	-		CCNA_03465	0.48	-1.0
3,628,709	+		CCNA_03465	0.52	-0.5
3,628,710	-		CCNA_03465	0.52	-1.8
3,628,710	-		CCNA_03465	0.52	-2.4
3,628,717	-		CCNA_03465	0.53	-1.9
3,628,717	-		CCNA_03465	0.53	-2.3
3,628,720	+		CCNA_03465	0.53	+2.1
3,628,728	-		CCNA_03465	0.54	-1.6
3,628,805	-		CCNA_03465	0.60	-0.9
3,628,806	+		CCNA_03465	0.61	-1.3
3,628,814	-		CCNA_03465	0.61	-2.1
3,628,814	-		CCNA_03465	0.61	+0.1
3,628,814	-		CCNA_03465	0.61	-0.1
3,628,824	-		CCNA_03465	0.62	-1.0
3,628,824	-		CCNA_03465	0.62	-1.7
3,628,824	-		CCNA_03465	0.62	-0.5
3,628,839	+		CCNA_03465	0.63	+0.5
3,628,847	-		CCNA_03465	0.64	-0.2
3,628,911	-		CCNA_03465	0.70	-1.5
3,628,922	+		CCNA_03465	0.71	-2.1
3,628,922	+		CCNA_03465	0.71	+0.5
3,628,930	-		CCNA_03465	0.72	-1.8
3,628,930	-		CCNA_03465	0.72	-1.9
3,628,930	-		CCNA_03465	0.72	-2.3
3,628,930	-		CCNA_03465	0.72	+0.4
3,628,959	+		CCNA_03465	0.74	-1.9
3,628,960	-		CCNA_03465	0.74	-0.9
3,628,965	-		CCNA_03465	0.75	-3.4
3,628,967	-		CCNA_03465	0.75	-2.2
3,628,975	-		CCNA_03465	0.76	-0.3
3,628,992	+		CCNA_03465	0.77	-2.6
3,629,014	-		CCNA_03465	0.79	-1.3
3,629,056	+		CCNA_03465	0.83	-1.3
3,629,056	+		CCNA_03465	0.83	-0.4
3,629,077	+		CCNA_03465	0.85	-0.7
3,629,080	+		CCNA_03465	0.85	-1.5
3,629,088	-		CCNA_03465	0.86	-0.7
3,629,088	-		CCNA_03465	0.86	-2.6
3,629,124	+		CCNA_03465	0.89	-3.0
3,629,129	+		CCNA_03465	0.89	-0.5
3,629,129	+		CCNA_03465	0.89	-0.3
3,629,129	+		CCNA_03465	0.89	-0.7
3,629,137	-		CCNA_03465	0.90	-2.6
3,629,137	-		CCNA_03465	0.90	-1.1
3,629,137	-		CCNA_03465	0.90	-2.7
3,629,137	-		CCNA_03465	0.90	-2.8
3,629,137	-		CCNA_03465	0.90	-3.1
3,629,137	-		CCNA_03465	0.90	-1.4
3,629,198	+				-3.4
3,629,211	-				-1.2
3,629,235	+				-3.8
3,629,235	+				-1.7
3,629,235	+				-0.5
3,629,235	+				-2.9
3,629,239	-				-1.7
3,629,243	-				-1.0
3,629,243	-				-2.3
3,629,267	-				+0.9
3,629,310	+				+2.1
3,629,368	-				-2.9
3,629,374	-				-1.0
3,629,374	-				-1.5
3,629,417	+				-1.4
3,629,424	-				-1.1
3,629,424	-				-2.0
3,629,433	+				+2.1
3,629,441	-				-1.7
3,629,441	-				-4.8
3,629,502	-				-0.3
3,629,505	+				-3.6
3,629,505	+				-2.5
3,629,512	-				+0.9
3,629,517	+				+1.1
3,629,546	-				+1.5
3,629,550	+				-0.7
3,629,550	+				+0.5
3,629,550	+				-0.3
3,629,550	+				+0.7
3,629,550	+				-0.9
3,629,550	+				-1.2
3,629,550	+				-1.3
3,629,558	-				-0.1
3,629,558	-				+0.1
3,629,558	-				-0.4
3,629,658	-				+0.9
3,629,721	-		CCNA_03466	0.11	+0.5
3,629,746	+		CCNA_03466	0.14	+0.9
3,629,746	-		CCNA_03466	0.14	-1.2
3,629,786	+		CCNA_03466	0.19	-2.3
3,629,800	+		CCNA_03466	0.21	-2.2
3,629,800	+		CCNA_03466	0.21	-0.0
3,629,802	-		CCNA_03466	0.21	-1.0
3,629,808	-		CCNA_03466	0.22	-0.7
3,629,880	+		CCNA_03466	0.31	+1.6
3,629,886	+		CCNA_03466	0.31	+1.9
3,629,945	+		CCNA_03466	0.39	-0.1
3,629,948	+		CCNA_03466	0.39	-1.2
3,629,953	-		CCNA_03466	0.40	-0.6
3,630,000	+		CCNA_03466	0.46	+0.4
3,630,000	+		CCNA_03466	0.46	-0.5
3,630,018	-		CCNA_03466	0.48	-1.2
3,630,060	+		CCNA_03466	0.53	-0.9
3,630,089	+		CCNA_03466	0.57	-2.9
3,630,138	+		CCNA_03466	0.63	-1.3
3,630,138	+		CCNA_03466	0.63	+0.4
3,630,138	+		CCNA_03466	0.63	+1.2
3,630,138	+		CCNA_03466	0.63	-0.5
3,630,138	+		CCNA_03466	0.63	+0.9
3,630,138	+		CCNA_03466	0.63	+1.0
3,630,138	+		CCNA_03466	0.63	+0.8
3,630,146	-		CCNA_03466	0.64	-0.3
3,630,146	-		CCNA_03466	0.64	+0.4
3,630,153	-		CCNA_03466	0.65	-0.1
3,630,175	+		CCNA_03466	0.67	+0.9
3,630,194	+		CCNA_03466	0.70	+1.2
3,630,201	+		CCNA_03466	0.71	+0.4
3,630,202	-		CCNA_03466	0.71	+0.2
3,630,232	+		CCNA_03466	0.74	-1.2