Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03424

Experiment: PYE 0.5x 4C survival rep1 58 days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE 0.5x 4C survival rep1 58 days
3,589,274	+		CCNA_03422	0.77	-0.3
3,589,274	+		CCNA_03422	0.77	+2.0
3,589,274	+		CCNA_03422	0.77	-1.5
3,589,282	-		CCNA_03422	0.77	+3.0
3,589,282	-		CCNA_03422	0.77	-0.5
3,589,314	+		CCNA_03422	0.79	-0.3
3,589,320	-		CCNA_03422	0.79	-0.2
3,589,323	+		CCNA_03422	0.80	+1.0
3,589,323	+		CCNA_03422	0.80	-0.8
3,589,331	-		CCNA_03422	0.80	-0.3
3,589,337	+		CCNA_03422	0.80	+0.0
3,589,370	-		CCNA_03422	0.82	+0.0
3,589,402	-		CCNA_03422	0.84	-0.8
3,589,405	+		CCNA_03422	0.84	-0.6
3,589,405	+		CCNA_03422	0.84	+0.3
3,589,447	+		CCNA_03422	0.86	-1.0
3,589,457	+		CCNA_03422	0.87	-0.3
3,589,464	+		CCNA_03422	0.87	+1.0
3,589,464	+		CCNA_03422	0.87	-1.9
3,589,520	+				-2.5
3,589,539	-				+0.1
3,589,594	+				-0.7
3,589,594	+				-2.2
3,589,647	+				+1.6
3,589,648	+				-0.6
3,589,655	-				+0.2
3,589,678	-				-1.1
3,589,678	-				+0.2
3,589,698	+				+1.8
3,589,729	+				+0.9
3,589,737	-				-2.1
3,589,737	-				-0.1
3,589,764	+				+2.0
3,589,784	-		CCNA_03423	0.14	+0.3
3,589,794	-		CCNA_03423	0.16	-2.6
3,589,800	+		CCNA_03423	0.18	-0.5
3,589,808	-		CCNA_03423	0.20	+0.3
3,589,821	-		CCNA_03423	0.23	-0.4
3,589,870	+		CCNA_03423	0.36	-0.1
3,589,891	+		CCNA_03423	0.41	-0.6
3,589,891	+		CCNA_03423	0.41	-1.5
3,589,893	+		CCNA_03423	0.42	+2.0
3,589,899	-		CCNA_03423	0.43	+0.5
3,589,899	-		CCNA_03423	0.43	-0.1
3,589,914	-		CCNA_03423	0.47	-1.4
3,589,914	-		CCNA_03423	0.47	-3.5
3,589,924	-		CCNA_03423	0.49	-2.2
3,589,963	+		CCNA_03423	0.59	+0.7
3,589,963	+		CCNA_03423	0.59	-1.2
3,589,971	-		CCNA_03423	0.62	+1.0
3,589,971	-		CCNA_03423	0.62	+0.0
3,589,971	-		CCNA_03423	0.62	-1.9
3,589,975	+		CCNA_03423	0.63	+2.0
3,589,983	-		CCNA_03423	0.65	-1.7
3,589,983	-		CCNA_03423	0.65	+0.0
3,589,983	-		CCNA_03423	0.65	+0.2
3,589,983	-		CCNA_03423	0.65	+0.0
3,589,997	-		CCNA_03423	0.68	-1.5
3,589,997	-		CCNA_03423	0.68	+0.7
3,589,997	-		CCNA_03423	0.68	-0.6
3,589,997	-		CCNA_03423	0.68	+0.4
3,589,997	-		CCNA_03423	0.68	-0.7
3,590,003	-		CCNA_03423	0.70	+1.1
3,590,047	-		CCNA_03423	0.81	-1.8
3,590,049	+		CCNA_03423	0.82	+0.0
3,590,049	+		CCNA_03423	0.82	-2.5
3,590,049	+		CCNA_03423	0.82	+0.0
3,590,057	-		CCNA_03423	0.84	-1.3
3,590,057	-		CCNA_03423	0.84	-0.6
3,590,057	-		CCNA_03423	0.84	+1.4
3,590,057	-		CCNA_03423	0.84	+2.0
3,590,057	-		CCNA_03423	0.84	+0.4
3,590,057	-		CCNA_03423	0.84	+2.0
3,590,057	-		CCNA_03423	0.84	-0.4
3,590,057	-		CCNA_03423	0.84	-1.0
3,590,057	-		CCNA_03423	0.84	-0.1
3,590,140	+				+0.9
3,590,140	+				-1.5
3,590,140	+				-1.7
3,590,140	+				-2.2
3,590,148	-				-1.4
3,590,148	-				-0.5
3,590,148	-				-0.2
3,590,148	-				-1.0
3,590,148	-				+0.2
3,590,148	-				-0.6
3,590,148	-				+1.8
3,590,148	-				+1.0
3,590,188	+				+0.3
3,590,190	+				-1.4
3,590,196	-				+0.0
3,590,198	-				-1.0
3,590,220	-				-1.7
3,590,220	-				-3.1
3,590,225	-				-0.5
3,590,324	-				-0.3
3,590,471	+		CCNA_03424	0.15	-1.0
3,590,471	+		CCNA_03424	0.15	-1.9
3,590,479	-		CCNA_03424	0.15	+0.4
3,590,523	+		CCNA_03424	0.18	-2.9
3,590,523	+		CCNA_03424	0.18	-0.8
3,590,523	+		CCNA_03424	0.18	-2.5
3,590,528	+		CCNA_03424	0.19	+1.0
3,590,538	+		CCNA_03424	0.19	-0.6
3,590,568	+		CCNA_03424	0.21	-0.5
3,590,622	+		CCNA_03424	0.25	-0.6
3,590,622	+		CCNA_03424	0.25	+0.2
3,590,654	-		CCNA_03424	0.27	+0.0
3,590,680	+		CCNA_03424	0.29	-2.1
3,590,680	+		CCNA_03424	0.29	-1.7
3,590,709	-		CCNA_03424	0.31	-1.9
3,590,718	+		CCNA_03424	0.32	-2.4
3,590,755	+		CCNA_03424	0.34	-0.8
3,590,814	-		CCNA_03424	0.38	-1.0
3,590,848	+		CCNA_03424	0.40	-1.0
3,590,943	-		CCNA_03424	0.47	-1.6
3,590,945	+		CCNA_03424	0.47	-0.1
3,590,945	+		CCNA_03424	0.47	+0.0
3,590,969	+		CCNA_03424	0.49	-0.3
3,591,012	+		CCNA_03424	0.52	+0.0
3,591,020	-		CCNA_03424	0.52	-0.6
3,591,029	+		CCNA_03424	0.53	-1.2
3,591,031	+		CCNA_03424	0.53	-0.5
3,591,031	+		CCNA_03424	0.53	-2.0
3,591,059	+		CCNA_03424	0.55	-0.6
3,591,085	-		CCNA_03424	0.57	+1.0
3,591,107	+		CCNA_03424	0.58	-1.0
3,591,188	+		CCNA_03424	0.64	+0.0
3,591,249	+		CCNA_03424	0.68	+0.7
3,591,296	-		CCNA_03424	0.71	-2.3
3,591,373	-		CCNA_03424	0.76	+2.0
3,591,389	+		CCNA_03424	0.77	-3.3
3,591,397	-		CCNA_03424	0.78	+0.0
3,591,435	+		CCNA_03424	0.81	-0.2
3,591,488	-		CCNA_03424	0.84	-1.6
3,591,534	-		CCNA_03424	0.87	+2.0
3,591,563	+		CCNA_03424	0.89	-1.6
3,591,563	+		CCNA_03424	0.89	+0.0
3,591,563	+		CCNA_03424	0.89	-2.2
3,591,563	+		CCNA_03424	0.89	-1.7
3,591,563	+		CCNA_03424	0.89	-1.1
3,591,563	-		CCNA_03424	0.89	+0.0
3,591,571	-		CCNA_03424	0.90	-0.3
3,591,578	+				+0.4
3,591,592	-				-1.0
3,591,609	-				-1.0
3,591,639	+				-1.5
3,591,668	+				+0.5
3,591,668	+				-0.2
3,591,695	-				+0.9
3,591,714	+				+0.5
3,591,727	-				-1.0
3,591,734	+		CCNA_03425	0.14	+0.7
3,591,769	-		CCNA_03425	0.48	+0.4
3,591,769	-		CCNA_03425	0.48	+1.0
3,591,773	+		CCNA_03425	0.52	+0.1
3,591,773	+		CCNA_03425	0.52	+1.3
3,591,773	+		CCNA_03425	0.52	+0.6
3,591,773	+		CCNA_03425	0.52	+0.7
3,591,773	+		CCNA_03425	0.52	+2.8
3,591,773	+		CCNA_03425	0.52	-2.0
3,591,773	+		CCNA_03425	0.52	+0.5
3,591,773	+		CCNA_03425	0.52	+2.8
3,591,773	+		CCNA_03425	0.52	-0.9
3,591,773	+		CCNA_03425	0.52	+1.0
3,591,773	+		CCNA_03425	0.52	+0.6
3,591,773	+		CCNA_03425	0.52	+1.0
3,591,773	+		CCNA_03425	0.52	+0.5
3,591,773	+		CCNA_03425	0.52	-0.1
3,591,779	-		CCNA_03425	0.58	+1.9
3,591,781	-		CCNA_03425	0.60	+0.3
3,591,781	-		CCNA_03425	0.60	+0.4
3,591,781	-		CCNA_03425	0.60	-0.2
3,591,781	-		CCNA_03425	0.60	+0.4
3,591,781	-		CCNA_03425	0.60	+0.3
3,591,781	-		CCNA_03425	0.60	-0.3
3,591,781	-		CCNA_03425	0.60	+0.6
3,591,781	-		CCNA_03425	0.60	-0.3
3,591,781	-		CCNA_03425	0.60	+1.4
3,591,781	-		CCNA_03425	0.60	-1.1
3,591,823	-				+0.8
3,591,856	+				+0.4
3,591,874	+				+0.1
3,591,912	+		CCNA_03426	0.13	-0.4
3,591,912	+		CCNA_03426	0.13	-0.5
3,591,912	+		CCNA_03426	0.13	-0.6
3,591,920	-		CCNA_03426	0.15	+0.8
3,591,920	-		CCNA_03426	0.15	+0.6
3,591,925	-		CCNA_03426	0.16	+1.1
3,591,964	+		CCNA_03426	0.24	-0.8
3,591,964	+		CCNA_03426	0.24	+0.1
3,591,972	-		CCNA_03426	0.26	+0.2
3,591,975	+		CCNA_03426	0.27	-0.5
3,591,975	+		CCNA_03426	0.27	+0.7
3,591,983	-		CCNA_03426	0.28	+1.0
3,591,987	-		CCNA_03426	0.29	+0.1
3,592,050	+		CCNA_03426	0.43	-0.2
3,592,051	-		CCNA_03426	0.43	+0.2
3,592,056	-		CCNA_03426	0.44	+0.7
3,592,068	-		CCNA_03426	0.47	+0.0
3,592,068	-		CCNA_03426	0.47	+0.8
3,592,075	+		CCNA_03426	0.48	-1.3
3,592,083	-		CCNA_03426	0.50	-1.0
3,592,096	-		CCNA_03426	0.53	-3.7
3,592,103	-		CCNA_03426	0.54	+1.2
3,592,129	+		CCNA_03426	0.60	+2.0
3,592,129	+		CCNA_03426	0.60	-2.0
3,592,137	-		CCNA_03426	0.62	-0.0
3,592,137	-		CCNA_03426	0.62	+0.9
3,592,152	+				-1.0
3,592,152	+		CCNA_03426	0.65	-1.0
3,592,155	-		CCNA_03426	0.65	+1.5
3,592,184	-		CCNA_03426	0.72	+0.9
3,592,222	-		CCNA_03426	0.80	-0.6
3,592,239	-		CCNA_03426	0.83	+0.6
3,592,239	-		CCNA_03426	0.83	+0.7
3,592,244	+		CCNA_03426	0.85	-2.6
3,592,306	-				+0.5
3,592,320	-				+0.2
3,592,325	-				+1.2
3,592,378	+				-1.6
3,592,416	-				+1.0
3,592,583	+				-0.8
3,592,586	-				+0.3
3,592,610	+				+0.9
3,592,610	+				+1.6
3,592,618	-				-0.1
3,592,618	-				+1.6
3,592,664	-		CCNA_03907	0.15	-1.5
3,592,665	-		CCNA_03907	0.16	-0.4
3,592,694	+		CCNA_03907	0.24	-1.6
3,592,694	+		CCNA_03907	0.24	+0.2
3,592,702	-		CCNA_03907	0.27	+0.6
3,592,702	-		CCNA_03907	0.27	+0.5
3,592,716	+		CCNA_03907	0.31	+0.3
3,592,716	+		CCNA_03907	0.31	-0.4
3,592,716	+		CCNA_03907	0.31	-0.6