Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02865

Experiment: PYE 0.5x 4C survival rep1 58 days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE 0.5x 4C survival rep1 58 days
3,017,234	-		CCNA_02863	0.40	-1.3
3,017,268	+		CCNA_02863	0.46	-1.5
3,017,283	+		CCNA_02863	0.48	-1.2
3,017,283	+		CCNA_02863	0.48	-0.0
3,017,311	-		CCNA_02863	0.52	+2.2
3,017,315	+		CCNA_02863	0.53	+0.2
3,017,364	+		CCNA_02863	0.61	+0.1
3,017,373	+		CCNA_02863	0.62	-2.3
3,017,378	+		CCNA_02863	0.63	-1.3
3,017,393	+		CCNA_02863	0.66	-1.3
3,017,422	+		CCNA_02863	0.70	-0.4
3,017,434	-		CCNA_02863	0.72	+2.0
3,017,506	-		CCNA_02863	0.84	+1.7
3,017,538	-		CCNA_02863	0.89	+0.4
3,017,543	-		CCNA_02863	0.90	-1.3
3,017,543	-		CCNA_02863	0.90	+0.5
3,017,560	+				-0.2
3,017,570	+				-0.1
3,017,578	-				-0.5
3,017,582	+				+2.7
3,017,608	-				-0.4
3,017,630	+				-2.4
3,017,648	+				-1.1
3,017,648	+				+1.2
3,017,697	-		CCNA_02864	0.15	+0.2
3,017,709	+		CCNA_02864	0.17	-0.6
3,017,709	+		CCNA_02864	0.17	+0.7
3,017,717	-		CCNA_02864	0.18	+3.8
3,017,717	-		CCNA_02864	0.18	+0.9
3,017,720	-		CCNA_02864	0.19	-0.5
3,017,726	-		CCNA_02864	0.20	+0.2
3,017,731	-		CCNA_02864	0.21	+0.6
3,017,773	-		CCNA_02864	0.27	-0.0
3,017,785	-		CCNA_02864	0.29	-1.1
3,017,792	+		CCNA_02864	0.30	-1.5
3,017,794	+		CCNA_02864	0.31	-0.5
3,017,837	+		CCNA_02864	0.37	-0.0
3,017,866	+		CCNA_02864	0.42	+2.0
3,017,903	+		CCNA_02864	0.48	-0.9
3,017,932	+		CCNA_02864	0.53	+2.2
3,017,951	+		CCNA_02864	0.56	+0.2
3,017,968	+		CCNA_02864	0.58	+1.0
3,017,972	-		CCNA_02864	0.59	-0.1
3,017,976	-		CCNA_02864	0.60	-2.7
3,017,979	-		CCNA_02864	0.60	+2.2
3,018,010	-		CCNA_02864	0.65	-0.1
3,018,030	-		CCNA_02864	0.68	-1.5
3,018,030	-		CCNA_02864	0.68	+0.3
3,018,034	+		CCNA_02864	0.69	-1.9
3,018,053	-		CCNA_02864	0.72	+0.8
3,018,096	+		CCNA_02864	0.79	-0.2
3,018,111	-		CCNA_02864	0.81	-0.5
3,018,153	-		CCNA_02864	0.88	+0.4
3,018,169	+				-1.7
3,018,169	+				-1.6
3,018,174	+				-0.8
3,018,174	+				-1.1
3,018,174	+				-0.1
3,018,177	-				-0.4
3,018,182	-				-0.1
3,018,182	-				+1.2
3,018,192	+				-2.5
3,018,200	-				+0.9
3,018,209	-				-0.3
3,018,226	+				-0.2
3,018,231	+				-0.9
3,018,239	-				+1.8
3,018,253	-				-1.3
3,018,273	+				+1.2
3,018,281	+				-0.8
3,018,282	+				+0.5
3,018,282	-				+1.2
3,018,296	-		CCNA_02865	0.11	+0.7
3,018,296	-		CCNA_02865	0.11	-2.1
3,018,375	+		CCNA_02865	0.23	+1.2
3,018,375	+		CCNA_02865	0.23	+0.4
3,018,383	-		CCNA_02865	0.24	-1.2
3,018,383	-		CCNA_02865	0.24	+0.8
3,018,383	-		CCNA_02865	0.24	-2.3
3,018,383	-		CCNA_02865	0.24	-0.9
3,018,383	-		CCNA_02865	0.24	-0.6
3,018,383	-		CCNA_02865	0.24	-0.2
3,018,384	+		CCNA_02865	0.25	-1.2
3,018,384	+		CCNA_02865	0.25	-1.9
3,018,486	+		CCNA_02865	0.41	-0.6
3,018,495	-		CCNA_02865	0.42	-1.3
3,018,524	+		CCNA_02865	0.47	-1.6
3,018,524	+		CCNA_02865	0.47	-0.3
3,018,526	+		CCNA_02865	0.47	+1.2
3,018,533	-		CCNA_02865	0.48	+0.5
3,018,539	-		CCNA_02865	0.49	-2.4
3,018,610	-		CCNA_02865	0.60	-1.1
3,018,634	+		CCNA_02865	0.64	+4.2
3,018,642	-		CCNA_02865	0.65	-3.1
3,018,687	+		CCNA_02865	0.72	-2.2
3,018,694	-		CCNA_02865	0.73	+0.1
3,018,709	-		CCNA_02865	0.76	+0.9
3,018,714	-		CCNA_02865	0.76	-1.9
3,018,775	-		CCNA_02865	0.86	-0.6
3,018,785	-		CCNA_02865	0.88	+1.7
3,018,802	-				-0.8
3,018,813	+				-1.3
3,018,821	-				+0.7
3,018,827	-				+2.2
3,018,840	-				-2.6
3,018,909	-				-1.3
3,018,937	+				-1.5
3,018,946	-				+0.5
3,018,967	+				+1.1
3,018,977	+				+0.2
3,018,982	+				+0.2
3,019,031	-				-1.7
3,019,119	-		CCNA_02866	0.23	-1.6
3,019,171	-		CCNA_02866	0.34	-3.0
3,019,171	-		CCNA_02866	0.34	-2.8
3,019,197	+		CCNA_02866	0.40	+1.3
3,019,218	+		CCNA_02866	0.45	+1.4
3,019,218	+		CCNA_02866	0.45	+1.5
3,019,242	+		CCNA_02866	0.50	+0.1
3,019,250	+		CCNA_02866	0.51	+1.0
3,019,271	-		CCNA_02866	0.56	-1.9
3,019,298	+		CCNA_02866	0.62	+1.8
3,019,298	+		CCNA_02866	0.62	+0.9
3,019,301	-		CCNA_02866	0.62	-3.7
3,019,306	-		CCNA_02866	0.63	-1.8
3,019,306	-		CCNA_02866	0.63	-2.3
3,019,306	-		CCNA_02866	0.63	-1.5
3,019,309	+		CCNA_02866	0.64	+1.3
3,019,331	-		CCNA_02866	0.69	-4.0
3,019,373	-		CCNA_02866	0.78	-2.3
3,019,384	+		CCNA_02866	0.80	+1.0
3,019,392	-		CCNA_02866	0.82	-4.0
3,019,410	-		CCNA_02866	0.86	-1.3
3,019,410	-		CCNA_02866	0.86	-2.0
3,019,451	-				-2.6
3,019,456	-				-2.0
3,019,490	-				+2.2
3,019,506	+				+1.4
3,019,506	+				+0.2
3,019,514	-				-2.2
3,019,538	+				+1.7
3,019,538	+				+1.6
3,019,546	-				-0.9
3,019,557	-				-1.7
3,019,557	-				-0.8
3,019,610	+				-1.2
3,019,610	+				+0.9
3,019,618	-				-1.6
3,019,618	-				-0.3
3,019,663	+				-1.6
3,019,663	+				+0.4
3,019,663	+				-0.8
3,019,663	+				-0.4
3,019,663	+				+2.7
3,019,663	+				-1.7
3,019,671	-				-2.6
3,019,671	-				-0.2
3,019,671	-				+0.7
3,019,671	-				-0.2
3,019,671	-				+1.9
3,019,671	-				+0.7
3,019,671	-				-0.3
3,019,682	+				+1.0
3,019,683	+				+1.7
3,019,685	-				+0.9
3,019,688	+				-0.3
3,019,688	+				+0.5
3,019,690	-				+0.9
3,019,696	-				+0.4
3,019,696	-				-0.3
3,019,696	-				+0.3
3,019,714	+		CCNA_02867	0.13	-1.2
3,019,723	-		CCNA_02867	0.15	+2.8
3,019,728	-		CCNA_02867	0.16	-0.0
3,019,728	-		CCNA_02867	0.16	-0.6
3,019,736	+		CCNA_02867	0.17	-3.4
3,019,744	-		CCNA_02867	0.19	+1.8
3,019,813	+		CCNA_02867	0.32	-1.1
3,019,813	+		CCNA_02867	0.32	+0.1
3,019,821	-		CCNA_02867	0.34	-1.8
3,019,821	-		CCNA_02867	0.34	-2.7
3,019,840	-		CCNA_02867	0.38	+0.5