Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02711

Experiment: PYE 0.5x 4C survival rep1 58 days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE 0.5x 4C survival rep1 58 days
2,869,441	+		CCNA_02709	0.76	+2.3
2,869,442	-		CCNA_02709	0.76	+1.3
2,869,449	-		CCNA_02709	0.78	-0.1
2,869,479	-		CCNA_02709	0.85	+0.6
2,869,489	-		CCNA_02709	0.87	+0.9
2,869,489	-		CCNA_02709	0.87	-0.9
2,869,534	-				+0.9
2,869,535	+				+1.7
2,869,554	+				-0.9
2,869,556	-				-0.7
2,869,562	-				+1.1
2,869,580	+				-1.4
2,869,587	-				-0.7
2,869,619	+				-0.0
2,869,645	+				+2.3
2,869,653	-				-4.1
2,869,653	-				+0.3
2,869,679	-				+1.6
2,869,695	-		CCNA_02710	0.12	-1.6
2,869,695	-		CCNA_02710	0.12	+2.3
2,869,695	-		CCNA_02710	0.12	+1.3
2,869,736	+		CCNA_02710	0.18	+1.3
2,869,744	-		CCNA_02710	0.19	-0.3
2,869,770	-		CCNA_02710	0.23	-1.4
2,869,871	-				-0.0
2,869,908	-		CCNA_02710	0.44	-0.1
2,869,915	-		CCNA_02710	0.46	-1.2
2,869,921	-		CCNA_02710	0.46	+0.3
2,869,945	-		CCNA_02710	0.50	-3.4
2,869,964	-		CCNA_02710	0.53	-1.8
2,869,965	+		CCNA_02710	0.53	+2.3
2,869,965	+		CCNA_02710	0.53	-1.2
2,869,969	+		CCNA_02710	0.54	+1.3
2,869,973	-		CCNA_02710	0.54	-2.0
2,869,973	-		CCNA_02710	0.54	+0.0
2,869,973	-		CCNA_02710	0.54	+1.3
2,869,991	+		CCNA_02710	0.57	+2.3
2,870,007	-		CCNA_02710	0.60	+0.7
2,870,062	-		CCNA_02710	0.68	-1.7
2,870,073	-		CCNA_02710	0.70	+2.3
2,870,090	+		CCNA_02710	0.72	-1.3
2,870,107	-		CCNA_02710	0.75	-1.5
2,870,112	-		CCNA_02710	0.75	-1.7
2,870,129	-		CCNA_02710	0.78	-0.8
2,870,129	-		CCNA_02710	0.78	-2.9
2,870,145	-		CCNA_02710	0.81	-2.4
2,870,151	-		CCNA_02710	0.81	-1.7
2,870,151	-		CCNA_02710	0.81	+1.3
2,870,151	-		CCNA_02710	0.81	-1.6
2,870,169	-		CCNA_02710	0.84	-0.3
2,870,169	-		CCNA_02710	0.84	-0.3
2,870,185	-		CCNA_02710	0.87	-3.9
2,870,219	-				-2.8
2,870,226	+				-1.5
2,870,275	+				+2.3
2,870,275	-				+1.0
2,870,280	+				+0.7
2,870,283	-				+0.2
2,870,288	-				-1.3
2,870,299	+				-0.1
2,870,338	+				-0.4
2,870,339	+				-0.5
2,870,345	+				+0.2
2,870,346	-				+2.3
2,870,346	-				-1.2
2,870,386	-				+0.3
2,870,424	-				-0.3
2,870,436	+				+1.1
2,870,458	-				+1.2
2,870,468	+		CCNA_02711	0.11	+0.4
2,870,488	-		CCNA_02711	0.16	+0.3
2,870,488	-		CCNA_02711	0.16	-1.6
2,870,529	+		CCNA_02711	0.25	+0.6
2,870,547	-		CCNA_02711	0.29	-2.2
2,870,614	+		CCNA_02711	0.44	+1.9
2,870,614	+		CCNA_02711	0.44	+0.7
2,870,622	-		CCNA_02711	0.46	-1.3
2,870,622	-		CCNA_02711	0.46	+0.2
2,870,624	+		CCNA_02711	0.46	+0.6
2,870,632	-		CCNA_02711	0.48	+0.3
2,870,632	-		CCNA_02711	0.48	-1.8
2,870,639	+		CCNA_02711	0.50	+0.4
2,870,639	+		CCNA_02711	0.50	-0.2
2,870,639	+		CCNA_02711	0.50	+1.0
2,870,639	+		CCNA_02711	0.50	+0.3
2,870,639	+		CCNA_02711	0.50	+0.3
2,870,639	+		CCNA_02711	0.50	+1.3
2,870,639	+		CCNA_02711	0.50	+1.2
2,870,647	-		CCNA_02711	0.51	+0.7
2,870,647	-		CCNA_02711	0.51	-0.7
2,870,647	-		CCNA_02711	0.51	-1.0
2,870,647	-		CCNA_02711	0.51	-0.9
2,870,652	-		CCNA_02711	0.52	-1.9
2,870,672	+		CCNA_02711	0.57	-0.4
2,870,680	-		CCNA_02711	0.59	-1.9
2,870,681	+		CCNA_02711	0.59	-0.6
2,870,710	-		CCNA_02711	0.66	-2.0
2,870,754	+		CCNA_02711	0.75	+0.2
2,870,764	-		CCNA_02711	0.78	-2.4
2,870,766	+		CCNA_02711	0.78	+0.2
2,870,766	+		CCNA_02711	0.78	+0.3
2,870,766	+		CCNA_02711	0.78	+0.7
2,870,769	-		CCNA_02711	0.79	+1.3
2,870,775	-		CCNA_02711	0.80	-0.8
2,870,780	-		CCNA_02711	0.81	+0.7
2,870,810	-		CCNA_02711	0.88	+0.3
2,870,818	-				-0.0
2,870,864	+				+1.2
2,870,883	+				+0.3
2,870,883	+				+0.7
2,870,883	+				+0.7
2,870,883	+				+0.8
2,870,883	+				+0.6
2,870,883	+				+2.2
2,870,885	-				+2.3
2,870,891	-				-2.2
2,870,891	-				-1.0
2,870,891	-				+1.3
2,870,907	+				+0.4
2,870,917	-				+2.3
2,870,944	-				-1.9
2,870,947	-				+0.7
2,870,951	+				+0.6
2,870,956	+				-0.3
2,870,966	+		CCNA_02712	0.11	+0.0
2,870,971	+		CCNA_02712	0.11	-0.3
2,871,002	+		CCNA_02712	0.14	+0.4
2,871,008	-		CCNA_02712	0.15	-1.6
2,871,017	+		CCNA_02712	0.16	-0.3
2,871,025	-		CCNA_02712	0.16	-0.4
2,871,055	-		CCNA_02712	0.19	-1.7
2,871,057	+		CCNA_02712	0.20	+2.4
2,871,105	-		CCNA_02712	0.24	+1.3
2,871,145	-		CCNA_02712	0.28	-0.7
2,871,156	+		CCNA_02712	0.29	+0.8
2,871,163	-		CCNA_02712	0.30	+0.4
2,871,188	+		CCNA_02712	0.32	+0.1
2,871,195	+		CCNA_02712	0.33	+0.4
2,871,196	-		CCNA_02712	0.33	-0.3
2,871,196	-		CCNA_02712	0.33	+2.3
2,871,230	-		CCNA_02712	0.37	-3.0
2,871,258	+		CCNA_02712	0.39	-0.0
2,871,260	+		CCNA_02712	0.40	+1.2
2,871,260	+		CCNA_02712	0.40	+0.5
2,871,260	+		CCNA_02712	0.40	+0.1
2,871,260	+		CCNA_02712	0.40	-0.9
2,871,260	+		CCNA_02712	0.40	+1.1
2,871,267	-		CCNA_02712	0.40	-1.5
2,871,268	-		CCNA_02712	0.40	+1.3
2,871,268	-		CCNA_02712	0.40	-3.3
2,871,299	+		CCNA_02712	0.43	+0.3
2,871,314	+		CCNA_02712	0.45	+0.4
2,871,359	+		CCNA_02712	0.49	-0.3
2,871,359	+		CCNA_02712	0.49	+1.3
2,871,376	-		CCNA_02712	0.51	-1.5
2,871,384	+		CCNA_02712	0.52	+0.7
2,871,394	+		CCNA_02712	0.53	+1.1
2,871,485	+		CCNA_02712	0.62	+2.3
2,871,485	+		CCNA_02712	0.62	+1.3
2,871,493	+		CCNA_02712	0.63	+0.7
2,871,501	-		CCNA_02712	0.63	+2.3
2,871,582	+		CCNA_02712	0.71	+1.2
2,871,677	+		CCNA_02712	0.81	+0.7
2,871,686	-		CCNA_02712	0.82	+2.3
2,871,712	+		CCNA_02712	0.84	+0.7
2,871,736	+		CCNA_02712	0.86	+0.4
2,871,748	-		CCNA_02712	0.88	+2.3
2,871,762	-		CCNA_02712	0.89	+2.3
2,871,773	-				-0.3
2,871,773	-				-0.3
2,871,792	+				+0.8
2,871,798	-				-1.8
2,871,800	-				-1.1
2,871,802	+				-0.1
2,871,802	+				+2.6
2,871,805	-				+1.7