Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01673

Experiment: PYE 0.5x 4C survival rep1 58 days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE 0.5x 4C survival rep1 58 days
1,794,066	-				+1.5
1,794,068	-				-1.5
1,794,068	-				-0.5
1,794,070	+				-0.8
1,794,070	+				+1.5
1,794,163	+		CCNA_01672	0.14	-3.5
1,794,200	+		CCNA_01672	0.17	+1.3
1,794,202	+		CCNA_01672	0.18	-0.1
1,794,202	+		CCNA_01672	0.18	+0.1
1,794,227	-		CCNA_01672	0.20	-0.1
1,794,227	-		CCNA_01672	0.20	+0.5
1,794,236	+		CCNA_01672	0.21	+1.1
1,794,236	+		CCNA_01672	0.21	-1.5
1,794,244	-		CCNA_01672	0.22	-1.0
1,794,284	-		CCNA_01672	0.26	-0.7
1,794,292	+		CCNA_01672	0.27	+0.5
1,794,292	+		CCNA_01672	0.27	-3.3
1,794,300	-		CCNA_01672	0.28	-0.9
1,794,300	-		CCNA_01672	0.28	+4.5
1,794,321	-		CCNA_01672	0.30	-1.4
1,794,333	+		CCNA_01672	0.31	-1.3
1,794,333	+		CCNA_01672	0.31	+0.1
1,794,335	-		CCNA_01672	0.31	+2.5
1,794,338	+		CCNA_01672	0.32	-0.3
1,794,341	-		CCNA_01672	0.32	-1.1
1,794,341	-		CCNA_01672	0.32	-1.7
1,794,341	-		CCNA_01672	0.32	-1.0
1,794,346	-		CCNA_01672	0.32	-1.1
1,794,346	-		CCNA_01672	0.32	-1.0
1,794,346	-		CCNA_01672	0.32	-0.3
1,794,346	-		CCNA_01672	0.32	-3.0
1,794,346	-		CCNA_01672	0.32	-2.1
1,794,373	+		CCNA_01672	0.35	-0.8
1,794,389	-		CCNA_01672	0.37	+0.3
1,794,418	-		CCNA_01672	0.40	-1.1
1,794,427	-		CCNA_01672	0.41	-2.0
1,794,487	+		CCNA_01672	0.47	-0.5
1,794,543	+		CCNA_01672	0.53	-0.9
1,794,586	-		CCNA_01672	0.57	+0.6
1,794,635	+		CCNA_01672	0.62	+0.1
1,794,736	+		CCNA_01672	0.72	-1.8
1,794,800	-		CCNA_01672	0.79	-0.7
1,794,849	+		CCNA_01672	0.84	-1.6
1,794,862	-				+1.5
1,794,875	+		CCNA_01672	0.87	-1.9
1,794,883	-		CCNA_01672	0.87	+1.5
1,795,008	+				-1.3
1,795,016	-				+0.9
1,795,032	-				-0.6
1,795,043	-				-1.0
1,795,100	+				-0.1
1,795,131	+		CCNA_01673	0.12	-0.1
1,795,138	-		CCNA_01673	0.13	-3.8
1,795,156	+		CCNA_01673	0.15	-1.1
1,795,197	-		CCNA_01673	0.19	+1.8
1,795,210	+		CCNA_01673	0.20	-2.6
1,795,218	-		CCNA_01673	0.21	-2.6
1,795,235	-		CCNA_01673	0.23	+1.5
1,795,345	-		CCNA_01673	0.34	-0.9
1,795,377	-		CCNA_01673	0.38	-0.3
1,795,382	+		CCNA_01673	0.38	+2.5
1,795,387	+		CCNA_01673	0.39	+1.5
1,795,387	+		CCNA_01673	0.39	-1.2
1,795,390	-		CCNA_01673	0.39	-1.0
1,795,390	-		CCNA_01673	0.39	-1.9
1,795,395	-		CCNA_01673	0.40	-1.7
1,795,395	-		CCNA_01673	0.40	-1.1
1,795,395	-		CCNA_01673	0.40	+0.7
1,795,395	-		CCNA_01673	0.40	-2.4
1,795,395	-		CCNA_01673	0.40	-1.6
1,795,395	-		CCNA_01673	0.40	-0.9
1,795,493	+		CCNA_01673	0.50	-0.1
1,795,526	-		CCNA_01673	0.54	+0.3
1,795,528	+		CCNA_01673	0.54	-3.0
1,795,528	+		CCNA_01673	0.54	+1.5
1,795,536	-		CCNA_01673	0.55	-2.4
1,795,541	+		CCNA_01673	0.55	+0.9
1,795,541	+		CCNA_01673	0.55	+2.5
1,795,541	+		CCNA_01673	0.55	+0.7
1,795,549	-		CCNA_01673	0.56	-0.7
1,795,549	-		CCNA_01673	0.56	-1.2
1,795,559	-		CCNA_01673	0.57	-2.4
1,795,559	-		CCNA_01673	0.57	-1.6
1,795,585	+		CCNA_01673	0.60	+2.5
1,795,593	-		CCNA_01673	0.61	-1.7
1,795,629	+		CCNA_01673	0.64	-2.4
1,795,667	+		CCNA_01673	0.68	-1.6
1,795,667	+		CCNA_01673	0.68	+0.1
1,795,732	+		CCNA_01673	0.75	-0.2
1,795,738	-		CCNA_01673	0.76	-2.7
1,795,769	+		CCNA_01673	0.79	+1.1
1,795,795	+		CCNA_01673	0.82	+0.1
1,795,795	+		CCNA_01673	0.82	-1.9
1,795,803	-		CCNA_01673	0.83	-1.0
1,795,803	-		CCNA_01673	0.83	+0.5
1,795,833	-		CCNA_01673	0.86	-3.4
1,795,842	-		CCNA_01673	0.87	-0.9
1,795,861	-		CCNA_01673	0.89	+1.2
1,795,865	-		CCNA_01673	0.89	-2.7
1,795,868	+		CCNA_01673	0.90	-2.0
1,795,880	+				+0.9
1,795,888	-				+1.5
1,795,900	-				-0.3
1,795,936	-				-1.2
1,795,954	+				-1.5
1,795,985	-				-1.3
1,796,023	-				+0.8
1,796,025	-				-1.6
1,796,027	+				-1.1
1,796,035	-				+0.9
1,796,035	-				-2.4
1,796,053	-				+0.8
1,796,088	+				-0.3
1,796,089	-				-0.0
1,796,096	-				-3.1
1,796,123	-		CCNA_01674	0.11	-1.7
1,796,129	+		CCNA_01674	0.11	-1.5
1,796,130	-		CCNA_01674	0.11	-0.9
1,796,136	-		CCNA_01674	0.11	-0.1
1,796,144	+		CCNA_01674	0.12	+1.5
1,796,191	+		CCNA_01674	0.15	-0.6
1,796,199	-		CCNA_01674	0.16	-0.3
1,796,206	-		CCNA_01674	0.16	+0.1
1,796,215	+		CCNA_01674	0.17	-0.3
1,796,218	+		CCNA_01674	0.17	+1.5
1,796,218	+		CCNA_01674	0.17	-0.5
1,796,244	-		CCNA_01674	0.19	+2.2
1,796,244	-		CCNA_01674	0.19	-0.3
1,796,244	-		CCNA_01674	0.19	-0.2
1,796,275	-		CCNA_01674	0.21	-0.5
1,796,275	-		CCNA_01674	0.21	-0.9
1,796,323	+		CCNA_01674	0.24	-1.6
1,796,323	+		CCNA_01674	0.24	-1.0
1,796,331	-		CCNA_01674	0.24	+2.1
1,796,331	-		CCNA_01674	0.24	-2.3
1,796,331	-		CCNA_01674	0.24	-0.8
1,796,352	-		CCNA_01674	0.26	-0.7
1,796,357	-		CCNA_01674	0.26	-0.3
1,796,367	-		CCNA_01674	0.27	-1.8
1,796,411	-		CCNA_01674	0.30	+2.9
1,796,411	-		CCNA_01674	0.30	-0.2
1,796,454	+		CCNA_01674	0.32	-1.6
1,796,458	-		CCNA_01674	0.33	-0.4
1,796,462	-		CCNA_01674	0.33	-1.4
1,796,464	+		CCNA_01674	0.33	-2.1
1,796,469	+		CCNA_01674	0.33	+1.1
1,796,485	+		CCNA_01674	0.34	-1.6
1,796,488	-		CCNA_01674	0.35	+2.5
1,796,527	+		CCNA_01674	0.37	-1.2
1,796,527	+		CCNA_01674	0.37	-1.9
1,796,527	+		CCNA_01674	0.37	-0.5
1,796,527	+		CCNA_01674	0.37	+2.5
1,796,527	+		CCNA_01674	0.37	-1.4
1,796,535	-		CCNA_01674	0.38	+0.1
1,796,545	-		CCNA_01674	0.38	-1.1
1,796,620	+		CCNA_01674	0.43	-1.5
1,796,630	+		CCNA_01674	0.44	+1.5
1,796,630	+		CCNA_01674	0.44	-1.4
1,796,638	-		CCNA_01674	0.44	-2.9
1,796,654	-		CCNA_01674	0.45	-1.3
1,796,669	+		CCNA_01674	0.46	-0.1
1,796,742	+		CCNA_01674	0.51	-0.3
1,796,750	-		CCNA_01674	0.52	-0.6
1,796,750	-		CCNA_01674	0.52	-0.7
1,796,805	+		CCNA_01674	0.55	-1.4
1,796,805	+		CCNA_01674	0.55	-2.9
1,796,813	-		CCNA_01674	0.56	-1.4
1,796,830	+		CCNA_01674	0.57	-0.6
1,796,902	-		CCNA_01674	0.62	-0.8
1,796,904	+		CCNA_01674	0.62	+2.5