Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01471

Experiment: PYE 0.5x 4C survival rep1 58 days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE 0.5x 4C survival rep1 58 days
1,577,150	+		CCNA_01469	0.26	-2.3
1,577,160	+		CCNA_01469	0.32	+0.1
1,577,175	+		CCNA_01469	0.40	-0.4
1,577,203	+		CCNA_01469	0.57	-0.6
1,577,227	-		CCNA_01469	0.71	+1.4
1,577,239	+		CCNA_01469	0.79	-0.9
1,577,248	+		CCNA_01469	0.84	-2.4
1,577,263	+				-0.8
1,577,263	+				+1.1
1,577,263	+				-0.1
1,577,278	-				-0.2
1,577,282	+				-2.3
1,577,297	+				-2.1
1,577,373	+		CCNA_01470	0.11	+0.5
1,577,399	-		CCNA_01470	0.14	-0.9
1,577,406	+		CCNA_01470	0.15	-0.8
1,577,410	+		CCNA_01470	0.16	+0.1
1,577,414	-		CCNA_01470	0.16	+2.4
1,577,439	+		CCNA_01470	0.19	-2.5
1,577,461	-		CCNA_01470	0.22	-1.4
1,577,483	+		CCNA_01470	0.24	+1.8
1,577,496	-		CCNA_01470	0.26	-2.0
1,577,500	+		CCNA_01470	0.26	+1.5
1,577,519	+		CCNA_01470	0.28	+3.4
1,577,521	+		CCNA_01470	0.28	-2.5
1,577,531	+		CCNA_01470	0.30	-1.9
1,577,531	+				-2.0
1,577,536	+		CCNA_01470	0.30	-1.1
1,577,557	+		CCNA_01470	0.33	-0.6
1,577,574	-		CCNA_01470	0.35	-1.4
1,577,585	-		CCNA_01470	0.36	+0.9
1,577,624	-		CCNA_01470	0.40	-0.6
1,577,638	-		CCNA_01470	0.42	-0.3
1,577,665	+		CCNA_01470	0.45	+1.4
1,577,666	+		CCNA_01470	0.45	-2.3
1,577,666	+		CCNA_01470	0.45	-0.3
1,577,666	+		CCNA_01470	0.45	-0.1
1,577,666	+		CCNA_01470	0.45	-1.9
1,577,672	+		CCNA_01470	0.46	+0.5
1,577,674	-		CCNA_01470	0.46	+3.4
1,577,680	-		CCNA_01470	0.47	-2.3
1,577,725	-		CCNA_01470	0.52	+1.4
1,577,745	-		CCNA_01470	0.54	-2.1
1,577,787	+		CCNA_01470	0.59	-0.2
1,577,813	+		CCNA_01470	0.62	-0.9
1,577,821	-		CCNA_01470	0.63	+0.4
1,577,821	-		CCNA_01470	0.63	-0.8
1,577,904	+		CCNA_01470	0.73	+0.8
1,577,948	-		CCNA_01470	0.78	-3.3
1,577,981	+		CCNA_01470	0.82	-0.8
1,578,007	-		CCNA_01470	0.85	-1.4
1,578,032	+		CCNA_01470	0.87	-1.4
1,578,040	-		CCNA_01470	0.88	-0.6
1,578,040	-		CCNA_01470	0.88	-0.2
1,578,085	-				-1.6
1,578,090	-				+1.4
1,578,108	+				-0.3
1,578,122	-				-0.8
1,578,142	+				+0.8
1,578,143	-				-2.1
1,578,150	-				-1.0
1,578,163	-				+2.4
1,578,211	+				+0.1
1,578,211	+				-1.0
1,578,211	+				-2.3
1,578,211	+				+0.6
1,578,219	-				+0.1
1,578,219	-				-0.5
1,578,219	-				+1.0
1,578,219	-				+0.6
1,578,225	-				-0.4
1,578,236	-				-1.5
1,578,237	-				-1.4
1,578,252	-				+0.8
1,578,267	+				-0.4
1,578,267	+				-0.4
1,578,270	-				-0.1
1,578,275	-				+0.3
1,578,275	-				-0.1
1,578,331	-		CCNA_01471	0.12	+3.4
1,578,341	+		CCNA_01471	0.13	-0.6
1,578,395	-		CCNA_01471	0.17	-0.9
1,578,463	+		CCNA_01471	0.21	+2.4
1,578,463	+		CCNA_01471	0.21	-0.7
1,578,507	-		CCNA_01471	0.24	-2.2
1,578,525	-		CCNA_01471	0.25	+0.4
1,578,536	+		CCNA_01471	0.26	-0.6
1,578,544	-		CCNA_01471	0.27	+0.1
1,578,556	+		CCNA_01471	0.27	-1.3
1,578,565	-		CCNA_01471	0.28	-0.2
1,578,571	+		CCNA_01471	0.29	+2.8
1,578,574	-		CCNA_01471	0.29	+0.4
1,578,576	-		CCNA_01471	0.29	+0.8
1,578,576	-		CCNA_01471	0.29	-0.4
1,578,628	-		CCNA_01471	0.32	-0.1
1,578,635	+		CCNA_01471	0.33	-2.6
1,578,643	-		CCNA_01471	0.33	+0.1
1,578,643	-		CCNA_01471	0.33	+2.4
1,578,643	-		CCNA_01471	0.33	+1.4
1,578,674	+		CCNA_01471	0.35	+0.4
1,578,748	+		CCNA_01471	0.40	-0.3
1,578,748	+		CCNA_01471	0.40	-0.2
1,578,751	-		CCNA_01471	0.41	-1.9
1,578,767	+		CCNA_01471	0.42	-1.5
1,578,805	+		CCNA_01471	0.44	-1.7
1,578,813	-		CCNA_01471	0.45	+0.8
1,578,818	+		CCNA_01471	0.45	-2.0
1,578,819	+		CCNA_01471	0.45	+1.0
1,578,850	+		CCNA_01471	0.47	-1.1
1,578,850	+		CCNA_01471	0.47	-1.8
1,578,850	+		CCNA_01471	0.47	-1.5
1,578,850	+		CCNA_01471	0.47	+0.7
1,578,858	-		CCNA_01471	0.48	-0.5
1,578,858	-		CCNA_01471	0.48	-0.8
1,578,858	-		CCNA_01471	0.48	-1.5
1,578,862	+		CCNA_01471	0.48	-0.6
1,578,865	-		CCNA_01471	0.48	-0.2
1,578,883	-		CCNA_01471	0.49	-2.2
1,578,898	+		CCNA_01471	0.50	-2.2
1,578,964	-		CCNA_01471	0.55	+0.4
1,578,965	+		CCNA_01471	0.55	-2.8
1,578,973	-		CCNA_01471	0.55	-0.6
1,579,018	+		CCNA_01471	0.58	-1.2
1,579,023	+		CCNA_01471	0.59	-0.4
1,579,031	-		CCNA_01471	0.59	+2.4
1,579,031	-		CCNA_01471	0.59	-0.2
1,579,055	+		CCNA_01471	0.61	-1.8
1,579,093	-		CCNA_01471	0.64	+1.4
1,579,139	+		CCNA_01471	0.67	-2.0
1,579,147	-		CCNA_01471	0.67	-2.0
1,579,192	+		CCNA_01471	0.70	-2.5
1,579,192	+		CCNA_01471	0.70	-3.8
1,579,192	+		CCNA_01471	0.70	-2.2
1,579,192	+		CCNA_01471	0.70	-3.1
1,579,192	+		CCNA_01471	0.70	-1.2
1,579,200	-		CCNA_01471	0.71	+1.4
1,579,200	-		CCNA_01471	0.71	-2.0
1,579,200	-		CCNA_01471	0.71	-3.0
1,579,200	-		CCNA_01471	0.71	+1.4
1,579,227	-		CCNA_01471	0.73	-0.6
1,579,235	-		CCNA_01471	0.73	+1.4
1,579,246	-		CCNA_01471	0.74	+2.4
1,579,291	+		CCNA_01471	0.77	-2.7
1,579,299	-		CCNA_01471	0.77	-2.6
1,579,355	+		CCNA_01471	0.81	-3.6
1,579,362	+		CCNA_01471	0.82	-2.2
1,579,370	-		CCNA_01471	0.82	-1.2
1,579,396	+		CCNA_01471	0.84	-0.9
1,579,398	+		CCNA_01471	0.84	-0.6
1,579,433	+		CCNA_01471	0.86	+1.6
1,579,439	+		CCNA_01471	0.87	-2.0
1,579,451	-		CCNA_01471	0.88	-0.2
1,579,466	-		CCNA_01471	0.89	-0.9
1,579,487	+		CCNA_01471	0.90	-2.1
1,579,502	+				-0.6
1,579,502	+				-1.1
1,579,510	-				-0.4
1,579,530	+				-2.2
1,579,556	+				-0.1
1,579,592	-				+1.4
1,579,594	+				-0.1
1,579,594	+				+0.4
1,579,594	+				-2.0
1,579,594	+				-2.6
1,579,594	+				-1.4
1,579,594	+				-2.1
1,579,594	+				-1.5
1,579,602	-				-0.9
1,579,602	-				-1.9
1,579,668	-				+0.3
1,579,678	+				-1.5
1,579,678	+				-1.4
1,579,686	-		CCNA_01472	0.11	-2.3
1,579,699	+		CCNA_01472	0.13	-0.5
1,579,707	-		CCNA_01472	0.15	+0.4
1,579,759	+		CCNA_01472	0.25	-2.6
1,579,800	+		CCNA_01472	0.33	-2.6
1,579,801	-		CCNA_01472	0.34	+1.4
1,579,813	+		CCNA_01472	0.36	-1.2
1,579,831	+		CCNA_01472	0.40	-0.4
1,579,848	+		CCNA_01472	0.43	-0.5
1,579,884	-		CCNA_01472	0.50	-2.5
1,579,903	+		CCNA_01472	0.54	-1.2
1,579,936	+		CCNA_01472	0.60	-1.1
1,580,006	+		CCNA_01472	0.74	-1.1
1,580,019	-				+2.4
1,580,039	-		CCNA_01472	0.81	-1.4
1,580,045	-		CCNA_01472	0.82	+0.8
1,580,068	-		CCNA_01472	0.87	+1.4
1,580,132	+				-0.1
1,580,140	+				-0.2
1,580,148	-				+0.8
1,580,208	-				-1.3
1,580,247	-				-0.2
1,580,287	-				-0.8
1,580,339	+				-0.2
1,580,429	+		CCNA_01473	0.14	-1.1
1,580,429	+		CCNA_01473	0.14	-1.1
1,580,437	-		CCNA_01473	0.14	+1.5
1,580,437	-		CCNA_01473	0.14	-1.6
1,580,453	-		CCNA_01473	0.15	+2.4
1,580,490	+		CCNA_01473	0.17	-0.2
1,580,518	-		CCNA_01473	0.18	-0.4
1,580,545	+		CCNA_01473	0.19	-3.0
1,580,564	-		CCNA_01473	0.20	-0.7
1,580,601	+		CCNA_01473	0.22	-2.2