Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01281

Experiment: PYE 0.5x 4C survival rep1 58 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01280 and CCNA_01281 are separated by 165 nucleotidesCCNA_01281 and CCNA_01282 are separated by 70 nucleotides CCNA_01280: CCNA_01280 - cell development regulator SpmY, at 1,405,813 to 1,406,898 _01280 CCNA_01281: CCNA_01281 - glycerol kinase, at 1,407,064 to 1,408,554 _01281 CCNA_01282: CCNA_01282 - gluconolactonase, at 1,408,625 to 1,409,668 _01282 Position (kb) 1407 1408 1409Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 1406.142 kb on - strand, within CCNA_01280at 1406.142 kb on - strand, within CCNA_01280at 1406.197 kb on + strand, within CCNA_01280at 1406.205 kb on - strand, within CCNA_01280at 1406.205 kb on - strand, within CCNA_01280at 1406.241 kb on - strand, within CCNA_01280at 1406.241 kb on - strandat 1406.241 kb on - strand, within CCNA_01280at 1406.251 kb on - strand, within CCNA_01280at 1406.253 kb on - strand, within CCNA_01280at 1406.253 kb on - strand, within CCNA_01280at 1406.302 kb on + strand, within CCNA_01280at 1406.344 kb on - strand, within CCNA_01280at 1406.344 kb on - strand, within CCNA_01280at 1406.344 kb on - strand, within CCNA_01280at 1406.388 kb on - strand, within CCNA_01280at 1406.444 kb on + strand, within CCNA_01280at 1406.511 kb on - strand, within CCNA_01280at 1406.570 kb on + strand, within CCNA_01280at 1406.573 kb on - strand, within CCNA_01280at 1406.613 kb on + strand, within CCNA_01280at 1406.621 kb on - strand, within CCNA_01280at 1406.645 kb on + strand, within CCNA_01280at 1406.674 kb on + strand, within CCNA_01280at 1406.677 kb on - strand, within CCNA_01280at 1406.687 kb on - strand, within CCNA_01280at 1406.704 kb on + strand, within CCNA_01280at 1406.752 kb on - strand, within CCNA_01280at 1406.761 kb on + strand, within CCNA_01280at 1406.782 kb on + strand, within CCNA_01280at 1406.815 kb on + strandat 1406.815 kb on + strandat 1406.823 kb on - strandat 1406.825 kb on + strandat 1406.835 kb on + strandat 1406.835 kb on + strandat 1406.846 kb on + strandat 1406.854 kb on - strandat 1406.899 kb on - strandat 1406.926 kb on - strandat 1406.988 kb on - strandat 1406.990 kb on + strandat 1406.990 kb on + strandat 1406.998 kb on - strandat 1406.998 kb on - strandat 1406.998 kb on - strandat 1407.074 kb on + strandat 1407.075 kb on - strandat 1407.082 kb on - strandat 1407.094 kb on - strandat 1407.094 kb on - strandat 1407.099 kb on - strandat 1407.101 kb on + strandat 1407.112 kb on + strandat 1407.142 kb on + strandat 1407.142 kb on + strandat 1407.142 kb on + strandat 1407.150 kb on - strandat 1407.150 kb on - strandat 1407.169 kb on + strandat 1407.177 kb on - strandat 1407.195 kb on + strandat 1407.216 kb on + strand, within CCNA_01281at 1407.219 kb on - strand, within CCNA_01281at 1407.219 kb on - strand, within CCNA_01281at 1407.224 kb on - strand, within CCNA_01281at 1407.224 kb on - strand, within CCNA_01281at 1407.224 kb on - strand, within CCNA_01281at 1407.238 kb on + strand, within CCNA_01281at 1407.241 kb on - strand, within CCNA_01281at 1407.241 kb on - strand, within CCNA_01281at 1407.284 kb on - strand, within CCNA_01281at 1407.296 kb on + strand, within CCNA_01281at 1407.304 kb on - strand, within CCNA_01281at 1407.368 kb on + strand, within CCNA_01281at 1407.383 kb on + strand, within CCNA_01281at 1407.383 kb on + strand, within CCNA_01281at 1407.385 kb on + strand, within CCNA_01281at 1407.391 kb on - strand, within CCNA_01281at 1407.391 kb on - strand, within CCNA_01281at 1407.402 kb on + strand, within CCNA_01281at 1407.402 kb on + strand, within CCNA_01281at 1407.402 kb on + strand, within CCNA_01281at 1407.402 kb on + strand, within CCNA_01281at 1407.402 kb on + strand, within CCNA_01281at 1407.402 kb on + strand, within CCNA_01281at 1407.402 kb on + strand, within CCNA_01281at 1407.402 kb on + strand, within CCNA_01281at 1407.402 kb on + strand, within CCNA_01281at 1407.402 kb on + strand, within CCNA_01281at 1407.408 kb on + strand, within CCNA_01281at 1407.410 kb on - strand, within CCNA_01281at 1407.410 kb on - strand, within CCNA_01281at 1407.410 kb on - strand, within CCNA_01281at 1407.410 kb on - strand, within CCNA_01281at 1407.410 kb on - strand, within CCNA_01281at 1407.410 kb on - strand, within CCNA_01281at 1407.410 kb on - strand, within CCNA_01281at 1407.410 kb on - strand, within CCNA_01281at 1407.410 kb on - strand, within CCNA_01281at 1407.410 kb on - strand, within CCNA_01281at 1407.410 kb on - strand, within CCNA_01281at 1407.422 kb on + strand, within CCNA_01281at 1407.431 kb on - strand, within CCNA_01281at 1407.475 kb on + strand, within CCNA_01281at 1407.550 kb on + strand, within CCNA_01281at 1407.558 kb on + strand, within CCNA_01281at 1407.559 kb on - strand, within CCNA_01281at 1407.563 kb on + strand, within CCNA_01281at 1407.571 kb on - strand, within CCNA_01281at 1407.646 kb on + strand, within CCNA_01281at 1407.654 kb on - strand, within CCNA_01281at 1407.678 kb on + strand, within CCNA_01281at 1407.685 kb on - strand, within CCNA_01281at 1407.686 kb on - strand, within CCNA_01281at 1407.709 kb on + strand, within CCNA_01281at 1407.709 kb on + strand, within CCNA_01281at 1407.709 kb on + strand, within CCNA_01281at 1407.709 kb on + strand, within CCNA_01281at 1407.717 kb on - strand, within CCNA_01281at 1407.717 kb on - strand, within CCNA_01281at 1407.717 kb on - strand, within CCNA_01281at 1407.717 kb on - strand, within CCNA_01281at 1407.717 kb on - strand, within CCNA_01281at 1407.810 kb on - strand, within CCNA_01281at 1407.810 kb on - strand, within CCNA_01281at 1407.811 kb on + strand, within CCNA_01281at 1407.829 kb on - strand, within CCNA_01281at 1407.837 kb on + strand, within CCNA_01281at 1407.837 kb on + strand, within CCNA_01281at 1407.837 kb on + strand, within CCNA_01281at 1407.845 kb on - strand, within CCNA_01281at 1407.845 kb on - strand, within CCNA_01281at 1407.847 kb on + strand, within CCNA_01281at 1407.863 kb on + strand, within CCNA_01281at 1407.873 kb on + strand, within CCNA_01281at 1407.936 kb on + strand, within CCNA_01281at 1407.983 kb on - strand, within CCNA_01281at 1408.013 kb on - strand, within CCNA_01281at 1408.053 kb on + strand, within CCNA_01281at 1408.053 kb on + strand, within CCNA_01281at 1408.061 kb on - strand, within CCNA_01281at 1408.148 kb on - strand, within CCNA_01281at 1408.166 kb on + strand, within CCNA_01281at 1408.166 kb on + strand, within CCNA_01281at 1408.174 kb on - strand, within CCNA_01281at 1408.174 kb on - strand, within CCNA_01281at 1408.174 kb on - strand, within CCNA_01281at 1408.176 kb on + strand, within CCNA_01281at 1408.213 kb on - strand, within CCNA_01281at 1408.220 kb on + strand, within CCNA_01281at 1408.221 kb on - strand, within CCNA_01281at 1408.228 kb on - strand, within CCNA_01281at 1408.230 kb on + strand, within CCNA_01281at 1408.230 kb on + strandat 1408.310 kb on - strand, within CCNA_01281at 1408.316 kb on + strand, within CCNA_01281at 1408.374 kb on + strand, within CCNA_01281at 1408.384 kb on + strand, within CCNA_01281at 1408.384 kb on + strand, within CCNA_01281at 1408.392 kb on - strand, within CCNA_01281at 1408.420 kb on + strandat 1408.428 kb on - strandat 1408.428 kb on - strandat 1408.452 kb on + strandat 1408.482 kb on + strandat 1408.519 kb on + strandat 1408.523 kb on + strandat 1408.537 kb on - strandat 1408.554 kb on + strandat 1408.555 kb on - strandat 1408.640 kb on + strandat 1408.648 kb on - strandat 1408.699 kb on - strandat 1408.701 kb on - strandat 1408.704 kb on - strandat 1408.817 kb on + strand, within CCNA_01282at 1408.852 kb on - strand, within CCNA_01282at 1408.860 kb on - strand, within CCNA_01282at 1408.882 kb on - strand, within CCNA_01282at 1408.940 kb on - strand, within CCNA_01282at 1408.946 kb on + strand, within CCNA_01282at 1408.963 kb on + strand, within CCNA_01282at 1409.003 kb on + strand, within CCNA_01282at 1409.082 kb on - strand, within CCNA_01282at 1409.089 kb on - strand, within CCNA_01282at 1409.096 kb on + strand, within CCNA_01282at 1409.096 kb on + strand, within CCNA_01282at 1409.106 kb on + strand, within CCNA_01282at 1409.119 kb on + strand, within CCNA_01282at 1409.138 kb on + strand, within CCNA_01282at 1409.163 kb on - strand, within CCNA_01282at 1409.171 kb on + strand, within CCNA_01282at 1409.203 kb on + strand, within CCNA_01282at 1409.210 kb on + strand, within CCNA_01282at 1409.281 kb on - strand, within CCNA_01282at 1409.291 kb on - strand, within CCNA_01282at 1409.321 kb on - strand, within CCNA_01282at 1409.364 kb on + strand, within CCNA_01282at 1409.364 kb on + strand, within CCNA_01282at 1409.371 kb on - strandat 1409.372 kb on - strand, within CCNA_01282at 1409.372 kb on - strand, within CCNA_01282at 1409.418 kb on + strand, within CCNA_01282at 1409.426 kb on - strand, within CCNA_01282at 1409.436 kb on - strand, within CCNA_01282at 1409.480 kb on + strand, within CCNA_01282

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE 0.5x 4C survival rep1 58 days
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1,406,142 - CCNA_01280 0.30 -3.1
1,406,142 - CCNA_01280 0.30 -2.8
1,406,197 + CCNA_01280 0.35 -1.0
1,406,205 - CCNA_01280 0.36 -0.3
1,406,205 - CCNA_01280 0.36 -1.6
1,406,241 - CCNA_01280 0.39 +2.3
1,406,241 - +2.3
1,406,241 - CCNA_01280 0.39 -0.9
1,406,251 - CCNA_01280 0.40 -2.4
1,406,253 - CCNA_01280 0.41 -3.2
1,406,253 - CCNA_01280 0.41 -0.9
1,406,302 + CCNA_01280 0.45 -1.3
1,406,344 - CCNA_01280 0.49 -1.3
1,406,344 - CCNA_01280 0.49 -1.4
1,406,344 - CCNA_01280 0.49 -3.3
1,406,388 - CCNA_01280 0.53 -1.9
1,406,444 + CCNA_01280 0.58 -3.1
1,406,511 - CCNA_01280 0.64 +0.7
1,406,570 + CCNA_01280 0.70 -0.4
1,406,573 - CCNA_01280 0.70 -2.0
1,406,613 + CCNA_01280 0.74 -0.3
1,406,621 - CCNA_01280 0.74 +0.4
1,406,645 + CCNA_01280 0.77 -3.0
1,406,674 + CCNA_01280 0.79 -1.1
1,406,677 - CCNA_01280 0.80 -0.4
1,406,687 - CCNA_01280 0.80 -2.7
1,406,704 + CCNA_01280 0.82 -3.4
1,406,752 - CCNA_01280 0.86 -2.3
1,406,761 + CCNA_01280 0.87 +1.5
1,406,782 + CCNA_01280 0.89 -0.7
1,406,815 + -0.9
1,406,815 + -2.3
1,406,823 - -3.6
1,406,825 + -0.4
1,406,835 + -1.6
1,406,835 + -0.7
1,406,846 + -1.4
1,406,854 - -1.9
1,406,899 - -3.9
1,406,926 - -2.7
1,406,988 - -1.2
1,406,990 + +0.8
1,406,990 + -2.5
1,406,998 - -0.3
1,406,998 - -2.0
1,406,998 - +0.2
1,407,074 + -0.9
1,407,075 - -1.3
1,407,082 - +0.1
1,407,094 - -0.1
1,407,094 - -0.9
1,407,099 - +0.3
1,407,101 + +1.6
1,407,112 + +1.0
1,407,142 + +0.8
1,407,142 + +1.3
1,407,142 + +4.3
1,407,150 - -0.1
1,407,150 - -0.6
1,407,169 + -2.0
1,407,177 - -0.7
1,407,195 + -0.6
1,407,216 + CCNA_01281 0.10 -0.3
1,407,219 - CCNA_01281 0.10 +0.2
1,407,219 - CCNA_01281 0.10 -1.2
1,407,224 - CCNA_01281 0.11 +0.1
1,407,224 - CCNA_01281 0.11 -2.4
1,407,224 - CCNA_01281 0.11 -0.2
1,407,238 + CCNA_01281 0.12 -0.7
1,407,241 - CCNA_01281 0.12 -0.6
1,407,241 - CCNA_01281 0.12 -1.4
1,407,284 - CCNA_01281 0.15 -1.4
1,407,296 + CCNA_01281 0.16 +0.2
1,407,304 - CCNA_01281 0.16 +2.3
1,407,368 + CCNA_01281 0.20 -0.3
1,407,383 + CCNA_01281 0.21 +0.7
1,407,383 + CCNA_01281 0.21 -0.7
1,407,385 + CCNA_01281 0.22 -0.1
1,407,391 - CCNA_01281 0.22 -0.1
1,407,391 - CCNA_01281 0.22 -1.3
1,407,402 + CCNA_01281 0.23 -0.1
1,407,402 + CCNA_01281 0.23 -0.4
1,407,402 + CCNA_01281 0.23 -1.2
1,407,402 + CCNA_01281 0.23 -0.9
1,407,402 + CCNA_01281 0.23 -3.0
1,407,402 + CCNA_01281 0.23 +0.6
1,407,402 + CCNA_01281 0.23 -1.4
1,407,402 + CCNA_01281 0.23 -1.1
1,407,402 + CCNA_01281 0.23 -1.7
1,407,402 + CCNA_01281 0.23 -1.9
1,407,408 + CCNA_01281 0.23 -0.7
1,407,410 - CCNA_01281 0.23 -0.1
1,407,410 - CCNA_01281 0.23 -2.1
1,407,410 - CCNA_01281 0.23 -0.3
1,407,410 - CCNA_01281 0.23 -1.3
1,407,410 - CCNA_01281 0.23 -0.1
1,407,410 - CCNA_01281 0.23 -1.3
1,407,410 - CCNA_01281 0.23 +1.8
1,407,410 - CCNA_01281 0.23 +0.2
1,407,410 - CCNA_01281 0.23 +2.3
1,407,410 - CCNA_01281 0.23 -2.3
1,407,410 - CCNA_01281 0.23 +2.3
1,407,422 + CCNA_01281 0.24 +0.0
1,407,431 - CCNA_01281 0.25 -0.3
1,407,475 + CCNA_01281 0.28 -2.1
1,407,550 + CCNA_01281 0.33 +0.3
1,407,558 + CCNA_01281 0.33 +1.1
1,407,559 - CCNA_01281 0.33 +3.8
1,407,563 + CCNA_01281 0.33 +1.3
1,407,571 - CCNA_01281 0.34 -2.9
1,407,646 + CCNA_01281 0.39 +1.3
1,407,654 - CCNA_01281 0.40 -1.7
1,407,678 + CCNA_01281 0.41 -0.3
1,407,685 - CCNA_01281 0.42 -0.1
1,407,686 - CCNA_01281 0.42 -1.4
1,407,709 + CCNA_01281 0.43 +0.8
1,407,709 + CCNA_01281 0.43 +3.8
1,407,709 + CCNA_01281 0.43 +0.1
1,407,709 + CCNA_01281 0.43 +0.7
1,407,717 - CCNA_01281 0.44 -0.7
1,407,717 - CCNA_01281 0.44 +1.3
1,407,717 - CCNA_01281 0.44 -0.3
1,407,717 - CCNA_01281 0.44 +2.3
1,407,717 - CCNA_01281 0.44 +2.3
1,407,810 - CCNA_01281 0.50 -3.0
1,407,810 - CCNA_01281 0.50 -0.6
1,407,811 + CCNA_01281 0.50 +0.3
1,407,829 - CCNA_01281 0.51 -0.1
1,407,837 + CCNA_01281 0.52 -1.4
1,407,837 + CCNA_01281 0.52 +1.3
1,407,837 + CCNA_01281 0.52 -1.3
1,407,845 - CCNA_01281 0.52 -1.6
1,407,845 - CCNA_01281 0.52 -1.7
1,407,847 + CCNA_01281 0.53 +0.1
1,407,863 + CCNA_01281 0.54 -0.3
1,407,873 + CCNA_01281 0.54 -0.2
1,407,936 + CCNA_01281 0.58 +0.4
1,407,983 - CCNA_01281 0.62 +2.2
1,408,013 - CCNA_01281 0.64 +2.3
1,408,053 + CCNA_01281 0.66 -1.0
1,408,053 + CCNA_01281 0.66 -1.3
1,408,061 - CCNA_01281 0.67 -0.1
1,408,148 - CCNA_01281 0.73 -2.3
1,408,166 + CCNA_01281 0.74 -0.3
1,408,166 + CCNA_01281 0.74 -0.1
1,408,174 - CCNA_01281 0.74 +2.3
1,408,174 - CCNA_01281 0.74 -0.1
1,408,174 - CCNA_01281 0.74 +0.7
1,408,176 + CCNA_01281 0.75 -0.3
1,408,213 - CCNA_01281 0.77 -1.4
1,408,220 + CCNA_01281 0.78 -1.7
1,408,221 - CCNA_01281 0.78 -1.2
1,408,228 - CCNA_01281 0.78 +0.3
1,408,230 + CCNA_01281 0.78 -1.9
1,408,230 + -0.5
1,408,310 - CCNA_01281 0.84 +1.3
1,408,316 + CCNA_01281 0.84 -1.6
1,408,374 + CCNA_01281 0.88 +2.3
1,408,384 + CCNA_01281 0.89 -0.8
1,408,384 + CCNA_01281 0.89 -0.3
1,408,392 - CCNA_01281 0.89 -1.9
1,408,420 + +1.9
1,408,428 - -0.9
1,408,428 - -0.7
1,408,452 + -1.0
1,408,482 + -0.6
1,408,519 + +0.1
1,408,523 + -0.8
1,408,537 - -1.5
1,408,554 + -2.0
1,408,555 - +0.5
1,408,640 + +1.0
1,408,648 - +0.2
1,408,699 - -0.8
1,408,701 - -1.2
1,408,704 - -3.0
1,408,817 + CCNA_01282 0.18 +1.9
1,408,852 - CCNA_01282 0.22 -1.3
1,408,860 - CCNA_01282 0.23 -1.4
1,408,882 - CCNA_01282 0.25 -2.9
1,408,940 - CCNA_01282 0.30 -0.8
1,408,946 + CCNA_01282 0.31 -0.9
1,408,963 + CCNA_01282 0.32 +0.7
1,409,003 + CCNA_01282 0.36 -0.3
1,409,082 - CCNA_01282 0.44 -1.0
1,409,089 - CCNA_01282 0.44 -0.8
1,409,096 + CCNA_01282 0.45 +2.2
1,409,096 + CCNA_01282 0.45 -1.6
1,409,106 + CCNA_01282 0.46 -0.8
1,409,119 + CCNA_01282 0.47 -1.8
1,409,138 + CCNA_01282 0.49 +0.0
1,409,163 - CCNA_01282 0.52 -2.6
1,409,171 + CCNA_01282 0.52 +0.1
1,409,203 + CCNA_01282 0.55 -0.9
1,409,210 + CCNA_01282 0.56 -0.8
1,409,281 - CCNA_01282 0.63 +2.6
1,409,291 - CCNA_01282 0.64 -0.5
1,409,321 - CCNA_01282 0.67 -2.2
1,409,364 + CCNA_01282 0.71 +0.5
1,409,364 + CCNA_01282 0.71 -0.7
1,409,371 - -0.1
1,409,372 - CCNA_01282 0.72 -0.1
1,409,372 - CCNA_01282 0.72 -1.6
1,409,418 + CCNA_01282 0.76 -0.7
1,409,426 - CCNA_01282 0.77 -0.3
1,409,436 - CCNA_01282 0.78 -1.1
1,409,480 + CCNA_01282 0.82 -2.5

Or see this region's nucleotide sequence