Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00950

Experiment: PYE 0.5x 4C survival rep1 58 days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE 0.5x 4C survival rep1 58 days
1,026,019	+		CCNA_00947	0.86	+1.7
1,026,027	-		CCNA_00947	0.86	+0.6
1,026,028	+		CCNA_00947	0.86	+1.5
1,026,028	+		CCNA_00947	0.86	+1.5
1,026,028	+		CCNA_00947	0.86	+1.3
1,026,028	+		CCNA_00947	0.86	+0.9
1,026,036	-		CCNA_00947	0.87	-0.6
1,026,046	-		CCNA_00947	0.87	+0.2
1,026,067	+		CCNA_00947	0.89	+1.2
1,026,067	+		CCNA_00947	0.89	+1.4
1,026,070	-		CCNA_00947	0.89	-0.1
1,026,072	+		CCNA_00947	0.89	+1.2
1,026,080	+		CCNA_00947	0.89	+1.6
1,026,149	+				+1.1
1,026,149	+				+1.1
1,026,157	-				-2.7
1,026,170	+				+1.2
1,026,180	+				+0.8
1,026,180	+				+1.6
1,026,180	+				+1.8
1,026,182	+				+1.0
1,026,182	+				+1.2
1,026,182	+				+1.5
1,026,188	-				+1.2
1,026,190	-				-1.6
1,026,190	-				-1.4
1,026,334	-				+1.2
1,026,401	+				+0.4
1,026,429	+				-1.6
1,026,462	+				-2.5
1,026,487	+		CCNA_00948	0.17	-1.5
1,026,540	+		CCNA_00948	0.36	-0.1
1,026,594	+		CCNA_00948	0.55	-1.8
1,026,706	+				-3.0
1,026,711	+				+0.9
1,026,714	+				+1.2
1,026,724	+				+0.6
1,026,724	+				+1.5
1,026,729	-				+2.2
1,026,732	-				-3.2
1,026,733	+				+1.2
1,026,741	-				+1.2
1,026,798	-		CCNA_00949	0.25	-0.6
1,026,897	-		CCNA_00949	0.69	+0.2
1,026,899	+		CCNA_00949	0.70	-0.2
1,026,917	+		CCNA_00949	0.78	-0.4
1,026,967	-				+0.2
1,026,970	+				+0.7
1,026,970	+				+0.5
1,026,972	+				+0.6
1,026,972	+				+0.5
1,026,972	+				+0.8
1,026,972	+				+1.3
1,026,972	+				+1.0
1,026,972	+				+0.9
1,026,980	-				-0.8
1,026,980	-				-0.1
1,027,013	+				+0.8
1,027,071	+				-2.7
1,027,071	+				-1.2
1,027,105	+				-1.1
1,027,115	+				-0.8
1,027,115	+				-1.1
1,027,115	+				-1.1
1,027,120	+				-1.1
1,027,144	+				+2.2
1,027,152	-		CCNA_00950	0.10	-0.1
1,027,190	+		CCNA_00950	0.12	+0.2
1,027,213	+		CCNA_00950	0.14	-1.2
1,027,213	+		CCNA_00950	0.14	+0.0
1,027,213	+		CCNA_00950	0.14	-2.2
1,027,221	-		CCNA_00950	0.14	-0.4
1,027,271	+		CCNA_00950	0.17	-2.1
1,027,276	+		CCNA_00950	0.18	-1.5
1,027,360	+		CCNA_00950	0.23	-4.2
1,027,388	+		CCNA_00950	0.24	-0.8
1,027,436	+		CCNA_00950	0.27	-2.0
1,027,436	+		CCNA_00950	0.27	-2.3
1,027,441	+		CCNA_00950	0.27	-3.9
1,027,444	-		CCNA_00950	0.28	+0.2
1,027,444	-		CCNA_00950	0.28	+2.2
1,027,462	+		CCNA_00950	0.29	-2.3
1,027,568	+		CCNA_00950	0.35	-1.0
1,027,568	-		CCNA_00950	0.35	-1.8
1,027,606	+		CCNA_00950	0.37	-1.0
1,027,606	+		CCNA_00950	0.37	-2.9
1,027,653	+		CCNA_00950	0.40	-3.9
1,027,653	+		CCNA_00950	0.40	-2.4
1,027,653	+		CCNA_00950	0.40	-3.7
1,027,656	-		CCNA_00950	0.40	+0.6
1,027,682	-		CCNA_00950	0.42	-0.1
1,027,748	+		CCNA_00950	0.46	-1.8
1,027,764	+		CCNA_00950	0.47	-2.8
1,027,764	+		CCNA_00950	0.47	-3.1
1,027,764	+		CCNA_00950	0.47	-2.9
1,027,764	+		CCNA_00950	0.47	-2.1
1,027,829	+		CCNA_00950	0.51	-2.1
1,027,834	+		CCNA_00950	0.51	-4.9
1,027,924	+		CCNA_00950	0.56	-1.7
1,027,950	+		CCNA_00950	0.58	-0.6
1,027,950	+		CCNA_00950	0.58	-0.8
1,027,950	+		CCNA_00950	0.58	-1.5
1,027,950	+		CCNA_00950	0.58	-2.5
1,027,950	+		CCNA_00950	0.58	+1.6
1,027,950	+		CCNA_00950	0.58	-0.3
1,027,950	+		CCNA_00950	0.58	-2.3
1,027,950	+		CCNA_00950	0.58	-3.0
1,027,955	+		CCNA_00950	0.58	-1.0
1,027,958	-		CCNA_00950	0.58	-0.6
1,027,958	-		CCNA_00950	0.58	+2.2
1,027,958	-		CCNA_00950	0.58	+2.2
1,028,002	-		CCNA_00950	0.61	-0.4
1,028,007	-		CCNA_00950	0.61	+2.2
1,028,081	+		CCNA_00950	0.66	-2.6
1,028,081	+		CCNA_00950	0.66	-0.1
1,028,081	+		CCNA_00950	0.66	-0.1
1,028,103	-		CCNA_00950	0.67	-0.1
1,028,183	+		CCNA_00950	0.72	-0.4
1,028,183	+		CCNA_00950	0.72	-0.4
1,028,183	+		CCNA_00950	0.72	-0.5
1,028,220	+		CCNA_00950	0.74	-2.1
1,028,243	-		CCNA_00950	0.76	+0.2
1,028,281	+		CCNA_00950	0.78	-3.9
1,028,304	+		CCNA_00950	0.79	-3.5
1,028,312	-		CCNA_00950	0.80	+2.2
1,028,368	+		CCNA_00950	0.83	-1.8
1,028,381	-		CCNA_00950	0.84	+1.2
1,028,382	+		CCNA_00950	0.84	-2.1
1,028,537	+				-2.4
1,028,537	+				-1.0
1,028,544	+				-0.7
1,028,545	-				+1.2
1,028,549	+				-0.7
1,028,549	+				-1.2
1,028,549	+				-3.7
1,028,557	-				+2.2
1,028,557	-				+1.2
1,028,563	-				-1.3
1,028,621	+				+0.2
1,028,650	-				-1.6
1,028,739	-				-1.1
1,028,743	+				-2.1
1,028,743	+				-2.9
1,028,751	-		CCNA_00951	0.10	+1.2
1,028,751	-		CCNA_00951	0.10	-1.5
1,028,751	-		CCNA_00951	0.10	-1.6
1,028,751	-		CCNA_00951	0.10	-0.4
1,028,751	-		CCNA_00951	0.10	+0.6
1,028,753	+		CCNA_00951	0.10	-1.7
1,028,753	+		CCNA_00951	0.10	-3.1
1,028,761	-		CCNA_00951	0.11	+2.2
1,028,796	-		CCNA_00951	0.14	+2.2
1,028,798	+		CCNA_00951	0.15	-1.1
1,028,849	+		CCNA_00951	0.20	-0.1
1,028,869	-		CCNA_00951	0.22	+0.6
1,028,876	+		CCNA_00951	0.22	-0.4
1,028,876	+		CCNA_00951	0.22	-1.0
1,028,886	+		CCNA_00951	0.23	-0.9
1,028,886	+		CCNA_00951	0.23	-0.8
1,028,886	+		CCNA_00951	0.23	-1.6
1,028,886	+		CCNA_00951	0.23	-2.7
1,028,886	+		CCNA_00951	0.23	-1.4
1,028,929	+		CCNA_00951	0.27	-0.7
1,028,929	+		CCNA_00951	0.27	-3.6
1,028,935	+		CCNA_00951	0.28	-3.9
1,028,937	-		CCNA_00951	0.28	+2.2
1,028,981	+		CCNA_00951	0.33	-3.6
1,028,985	+		CCNA_00951	0.33	-2.4
1,028,998	-		CCNA_00951	0.34	+2.2
1,029,043	+		CCNA_00951	0.39	-2.9
1,029,044	+		CCNA_00951	0.39	-2.7
1,029,073	+		CCNA_00951	0.42	-1.7
1,029,073	+		CCNA_00951	0.42	-1.3
1,029,073	+		CCNA_00951	0.42	+0.2
1,029,093	+		CCNA_00951	0.43	-1.7
1,029,154	+		CCNA_00951	0.49	+2.2
1,029,159	+		CCNA_00951	0.50	-2.7
1,029,176	+		CCNA_00951	0.52	+0.2
1,029,426	+		CCNA_00951	0.76	-2.4
1,029,449	+		CCNA_00951	0.78	-3.3
1,029,449	+		CCNA_00951	0.78	-1.2
1,029,484	+		CCNA_00951	0.82	-0.4
1,029,484	+		CCNA_00951	0.82	-0.9
1,029,556	+		CCNA_00951	0.89	+0.1
1,029,564	-		CCNA_00951	0.90	+1.2
1,029,580	+				+1.4
1,029,633	-				-3.0