Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00166

Experiment: PYE 0.5x 4C survival rep1 58 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00165 and CCNA_03915 are separated by 198 nucleotidesCCNA_03915 and CCNA_00166 are separated by 161 nucleotidesCCNA_00166 and CCNA_00167 are separated by 240 nucleotides CCNA_00165: CCNA_00165 - polyisoprenylphosphate hexose-1-phosphotransferase pssY, at 177,092 to 177,745 _00165 CCNA_03915: CCNA_03915 - hypothetical protein, at 177,944 to 178,090 _03915 CCNA_00166: CCNA_00166 - putative transglutaminase-like cysteine proteinase, at 178,252 to 179,070 _00166 CCNA_00167: CCNA_00167 - metallophosphatase family protein, at 179,311 to 180,120 _00167 Position (kb) 178 179 180Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 177.255 kb on + strand, within CCNA_00165at 177.258 kb on - strandat 177.263 kb on - strand, within CCNA_00165at 177.312 kb on + strand, within CCNA_00165at 177.320 kb on - strand, within CCNA_00165at 177.320 kb on - strandat 177.320 kb on - strand, within CCNA_00165at 177.378 kb on + strand, within CCNA_00165at 177.400 kb on + strand, within CCNA_00165at 177.445 kb on - strand, within CCNA_00165at 177.454 kb on - strand, within CCNA_00165at 177.472 kb on + strand, within CCNA_00165at 177.472 kb on + strand, within CCNA_00165at 177.472 kb on + strand, within CCNA_00165at 177.472 kb on + strand, within CCNA_00165at 177.570 kb on - strand, within CCNA_00165at 177.570 kb on - strand, within CCNA_00165at 177.686 kb on - strandat 177.699 kb on + strandat 177.714 kb on + strandat 177.719 kb on + strandat 177.722 kb on - strandat 177.771 kb on + strandat 177.785 kb on - strandat 177.795 kb on - strandat 177.802 kb on + strandat 177.808 kb on - strandat 177.828 kb on - strandat 177.828 kb on - strandat 177.863 kb on + strandat 177.881 kb on + strandat 177.906 kb on - strandat 178.056 kb on - strand, within CCNA_03915at 178.084 kb on + strandat 178.084 kb on + strandat 178.092 kb on - strandat 178.092 kb on - strandat 178.099 kb on + strandat 178.108 kb on + strandat 178.167 kb on + strandat 178.175 kb on - strandat 178.179 kb on + strandat 178.179 kb on + strandat 178.187 kb on + strandat 178.187 kb on - strandat 178.206 kb on - strandat 178.218 kb on + strandat 178.228 kb on + strandat 178.235 kb on + strandat 178.275 kb on - strandat 178.293 kb on + strandat 178.309 kb on + strandat 178.317 kb on - strandat 178.320 kb on + strandat 178.337 kb on + strand, within CCNA_00166at 178.346 kb on - strand, within CCNA_00166at 178.346 kb on - strand, within CCNA_00166at 178.346 kb on - strand, within CCNA_00166at 178.389 kb on - strand, within CCNA_00166at 178.389 kb on - strand, within CCNA_00166at 178.389 kb on - strand, within CCNA_00166at 178.389 kb on - strand, within CCNA_00166at 178.389 kb on - strand, within CCNA_00166at 178.402 kb on + strand, within CCNA_00166at 178.424 kb on + strand, within CCNA_00166at 178.424 kb on + strand, within CCNA_00166at 178.449 kb on + strand, within CCNA_00166at 178.483 kb on + strand, within CCNA_00166at 178.502 kb on + strand, within CCNA_00166at 178.502 kb on + strand, within CCNA_00166at 178.510 kb on - strand, within CCNA_00166at 178.510 kb on - strand, within CCNA_00166at 178.520 kb on + strand, within CCNA_00166at 178.535 kb on + strand, within CCNA_00166at 178.535 kb on + strand, within CCNA_00166at 178.543 kb on - strand, within CCNA_00166at 178.543 kb on - strand, within CCNA_00166at 178.543 kb on - strand, within CCNA_00166at 178.545 kb on + strand, within CCNA_00166at 178.548 kb on - strand, within CCNA_00166at 178.548 kb on - strand, within CCNA_00166at 178.548 kb on - strand, within CCNA_00166at 178.597 kb on - strand, within CCNA_00166at 178.610 kb on - strand, within CCNA_00166at 178.646 kb on - strand, within CCNA_00166at 178.649 kb on + strand, within CCNA_00166at 178.654 kb on + strand, within CCNA_00166at 178.654 kb on + strand, within CCNA_00166at 178.654 kb on + strand, within CCNA_00166at 178.657 kb on - strand, within CCNA_00166at 178.662 kb on - strand, within CCNA_00166at 178.662 kb on - strand, within CCNA_00166at 178.664 kb on + strand, within CCNA_00166at 178.664 kb on + strand, within CCNA_00166at 178.664 kb on + strand, within CCNA_00166at 178.664 kb on + strand, within CCNA_00166at 178.672 kb on - strand, within CCNA_00166at 178.691 kb on - strand, within CCNA_00166at 178.696 kb on + strand, within CCNA_00166at 178.717 kb on + strand, within CCNA_00166at 178.725 kb on - strand, within CCNA_00166at 178.725 kb on - strand, within CCNA_00166at 178.757 kb on + strand, within CCNA_00166at 178.816 kb on + strand, within CCNA_00166at 178.817 kb on - strand, within CCNA_00166at 178.828 kb on + strand, within CCNA_00166at 178.833 kb on + strand, within CCNA_00166at 178.833 kb on + strand, within CCNA_00166at 178.836 kb on - strand, within CCNA_00166at 178.841 kb on - strand, within CCNA_00166at 178.845 kb on + strand, within CCNA_00166at 178.874 kb on + strand, within CCNA_00166at 178.874 kb on + strand, within CCNA_00166at 178.875 kb on - strand, within CCNA_00166at 178.875 kb on - strand, within CCNA_00166at 178.882 kb on - strand, within CCNA_00166at 178.882 kb on - strand, within CCNA_00166at 178.913 kb on - strand, within CCNA_00166at 178.914 kb on + strand, within CCNA_00166at 178.914 kb on + strand, within CCNA_00166at 178.920 kb on - strand, within CCNA_00166at 178.922 kb on - strand, within CCNA_00166at 178.953 kb on - strand, within CCNA_00166at 178.962 kb on + strand, within CCNA_00166at 178.962 kb on + strand, within CCNA_00166at 178.970 kb on - strand, within CCNA_00166at 178.970 kb on - strand, within CCNA_00166at 178.987 kb on + strand, within CCNA_00166at 178.991 kb on + strandat 179.003 kb on + strandat 179.009 kb on - strandat 179.012 kb on - strandat 179.025 kb on - strandat 179.030 kb on + strandat 179.038 kb on - strandat 179.038 kb on - strandat 179.049 kb on - strandat 179.145 kb on - strandat 179.249 kb on + strandat 179.249 kb on + strandat 179.334 kb on + strandat 179.334 kb on + strandat 179.334 kb on + strandat 179.341 kb on + strandat 179.349 kb on - strandat 179.354 kb on - strandat 179.377 kb on + strandat 179.379 kb on + strandat 179.379 kb on + strandat 179.379 kb on + strandat 179.381 kb on + strandat 179.387 kb on - strandat 179.389 kb on - strandat 179.389 kb on - strandat 179.418 kb on - strand, within CCNA_00167at 179.434 kb on + strand, within CCNA_00167at 179.469 kb on - strand, within CCNA_00167at 179.471 kb on + strand, within CCNA_00167at 179.543 kb on + strand, within CCNA_00167at 179.543 kb on + strand, within CCNA_00167at 179.543 kb on + strand, within CCNA_00167at 179.543 kb on + strand, within CCNA_00167at 179.551 kb on - strand, within CCNA_00167at 179.561 kb on + strand, within CCNA_00167at 179.587 kb on + strand, within CCNA_00167at 179.636 kb on + strand, within CCNA_00167at 179.636 kb on + strand, within CCNA_00167at 179.751 kb on + strand, within CCNA_00167at 179.798 kb on + strand, within CCNA_00167at 179.798 kb on + strand, within CCNA_00167at 179.806 kb on - strand, within CCNA_00167at 179.819 kb on + strand, within CCNA_00167at 179.826 kb on + strand, within CCNA_00167at 179.857 kb on + strand, within CCNA_00167at 179.868 kb on + strand, within CCNA_00167at 179.898 kb on + strand, within CCNA_00167at 179.903 kb on + strand, within CCNA_00167at 179.945 kb on + strand, within CCNA_00167at 179.983 kb on - strand, within CCNA_00167at 180.030 kb on - strand, within CCNA_00167at 180.039 kb on + strand, within CCNA_00167at 180.041 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE 0.5x 4C survival rep1 58 days
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177,255 + CCNA_00165 0.25 +0.2
177,258 - +2.2
177,263 - CCNA_00165 0.26 +0.2
177,312 + CCNA_00165 0.34 +0.4
177,320 - CCNA_00165 0.35 -0.6
177,320 - -0.1
177,320 - CCNA_00165 0.35 +0.9
177,378 + CCNA_00165 0.44 +0.4
177,400 + CCNA_00165 0.47 -1.5
177,445 - CCNA_00165 0.54 +0.6
177,454 - CCNA_00165 0.55 +0.0
177,472 + CCNA_00165 0.58 -0.3
177,472 + CCNA_00165 0.58 +0.9
177,472 + CCNA_00165 0.58 +4.8
177,472 + CCNA_00165 0.58 -0.6
177,570 - CCNA_00165 0.73 -0.6
177,570 - CCNA_00165 0.73 +0.4
177,686 - -1.1
177,699 + -1.8
177,714 + +0.2
177,719 + +1.4
177,722 - -1.0
177,771 + +0.3
177,785 - +0.0
177,795 - -1.9
177,802 + +0.1
177,808 - -1.1
177,828 - +0.2
177,828 - -2.2
177,863 + -2.1
177,881 + +0.3
177,906 - +2.2
178,056 - CCNA_03915 0.76 -1.1
178,084 + -0.9
178,084 + +0.3
178,092 - -1.7
178,092 - -3.2
178,099 + +0.8
178,108 + +1.1
178,167 + -1.2
178,175 - -0.3
178,179 + +1.4
178,179 + +0.7
178,187 + +0.3
178,187 - +0.3
178,206 - +0.2
178,218 + -2.8
178,228 + -0.9
178,235 + -2.0
178,275 - -0.1
178,293 + -1.4
178,309 + -2.0
178,317 - -2.3
178,320 + -2.5
178,337 + CCNA_00166 0.10 -1.6
178,346 - CCNA_00166 0.11 +0.2
178,346 - CCNA_00166 0.11 -0.1
178,346 - CCNA_00166 0.11 -1.1
178,389 - CCNA_00166 0.17 -2.1
178,389 - CCNA_00166 0.17 -3.0
178,389 - CCNA_00166 0.17 -0.6
178,389 - CCNA_00166 0.17 -1.5
178,389 - CCNA_00166 0.17 -1.4
178,402 + CCNA_00166 0.18 -1.0
178,424 + CCNA_00166 0.21 -1.0
178,424 + CCNA_00166 0.21 -0.4
178,449 + CCNA_00166 0.24 +0.0
178,483 + CCNA_00166 0.28 -0.4
178,502 + CCNA_00166 0.31 -2.7
178,502 + CCNA_00166 0.31 -0.8
178,510 - CCNA_00166 0.32 -0.4
178,510 - CCNA_00166 0.32 -1.9
178,520 + CCNA_00166 0.33 -1.4
178,535 + CCNA_00166 0.35 -2.9
178,535 + CCNA_00166 0.35 -0.8
178,543 - CCNA_00166 0.36 -1.7
178,543 - CCNA_00166 0.36 -1.9
178,543 - CCNA_00166 0.36 -1.3
178,545 + CCNA_00166 0.36 -2.4
178,548 - CCNA_00166 0.36 -3.4
178,548 - CCNA_00166 0.36 -2.0
178,548 - CCNA_00166 0.36 -2.4
178,597 - CCNA_00166 0.42 -2.5
178,610 - CCNA_00166 0.44 -2.4
178,646 - CCNA_00166 0.48 -0.2
178,649 + CCNA_00166 0.48 -1.9
178,654 + CCNA_00166 0.49 -2.7
178,654 + CCNA_00166 0.49 -4.6
178,654 + CCNA_00166 0.49 -2.6
178,657 - CCNA_00166 0.49 -1.8
178,662 - CCNA_00166 0.50 -2.5
178,662 - CCNA_00166 0.50 -0.7
178,664 + CCNA_00166 0.50 -1.5
178,664 + CCNA_00166 0.50 -2.7
178,664 + CCNA_00166 0.50 -1.8
178,664 + CCNA_00166 0.50 -3.1
178,672 - CCNA_00166 0.51 -1.4
178,691 - CCNA_00166 0.54 -0.7
178,696 + CCNA_00166 0.54 -2.8
178,717 + CCNA_00166 0.57 -1.9
178,725 - CCNA_00166 0.58 -1.1
178,725 - CCNA_00166 0.58 -2.1
178,757 + CCNA_00166 0.62 -0.1
178,816 + CCNA_00166 0.69 -0.9
178,817 - CCNA_00166 0.69 -1.9
178,828 + CCNA_00166 0.70 -0.1
178,833 + CCNA_00166 0.71 -2.6
178,833 + CCNA_00166 0.71 -1.6
178,836 - CCNA_00166 0.71 -3.1
178,841 - CCNA_00166 0.72 -0.5
178,845 + CCNA_00166 0.72 -2.2
178,874 + CCNA_00166 0.76 -2.6
178,874 + CCNA_00166 0.76 -3.6
178,875 - CCNA_00166 0.76 -2.0
178,875 - CCNA_00166 0.76 -0.9
178,882 - CCNA_00166 0.77 -2.3
178,882 - CCNA_00166 0.77 -1.7
178,913 - CCNA_00166 0.81 -2.7
178,914 + CCNA_00166 0.81 -1.9
178,914 + CCNA_00166 0.81 -1.6
178,920 - CCNA_00166 0.82 -2.7
178,922 - CCNA_00166 0.82 -2.5
178,953 - CCNA_00166 0.86 -0.4
178,962 + CCNA_00166 0.87 -1.8
178,962 + CCNA_00166 0.87 -1.3
178,970 - CCNA_00166 0.88 -0.4
178,970 - CCNA_00166 0.88 -0.6
178,987 + CCNA_00166 0.90 -3.0
178,991 + -2.2
179,003 + -1.4
179,009 - -1.2
179,012 - -2.5
179,025 - -1.9
179,030 + +0.7
179,038 - +1.3
179,038 - -3.3
179,049 - -2.3
179,145 - -0.8
179,249 + +0.1
179,249 + -1.8
179,334 + +0.3
179,334 + +0.2
179,334 + -1.2
179,341 + +1.1
179,349 - +2.2
179,354 - -1.5
179,377 + +2.1
179,379 + -2.8
179,379 + +1.0
179,379 + +0.7
179,381 + +1.4
179,387 - -1.1
179,389 - -1.3
179,389 - -0.6
179,418 - CCNA_00167 0.13 -1.1
179,434 + CCNA_00167 0.15 +1.5
179,469 - CCNA_00167 0.20 -1.3
179,471 + CCNA_00167 0.20 +1.3
179,543 + CCNA_00167 0.29 +1.9
179,543 + CCNA_00167 0.29 +2.0
179,543 + CCNA_00167 0.29 +1.7
179,543 + CCNA_00167 0.29 +1.8
179,551 - CCNA_00167 0.30 -1.4
179,561 + CCNA_00167 0.31 +2.8
179,587 + CCNA_00167 0.34 +2.2
179,636 + CCNA_00167 0.40 +1.3
179,636 + CCNA_00167 0.40 +1.5
179,751 + CCNA_00167 0.54 +2.7
179,798 + CCNA_00167 0.60 +1.8
179,798 + CCNA_00167 0.60 +1.2
179,806 - CCNA_00167 0.61 -2.7
179,819 + CCNA_00167 0.63 +2.1
179,826 + CCNA_00167 0.64 +1.3
179,857 + CCNA_00167 0.67 +1.7
179,868 + CCNA_00167 0.69 +1.5
179,898 + CCNA_00167 0.72 +1.3
179,903 + CCNA_00167 0.73 +1.0
179,945 + CCNA_00167 0.78 +1.4
179,983 - CCNA_00167 0.83 -3.0
180,030 - CCNA_00167 0.89 +1.7
180,039 + CCNA_00167 0.90 +1.3
180,041 + +2.9

Or see this region's nucleotide sequence