Experiment: PYE 0.5x 4C survival rep1 58 days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00009 and CCNA_00010 are separated by 374 nucleotides CCNA_00010 and CCNA_00011 are separated by 162 nucleotides
CCNA_00009: CCNA_00009 - alkylated DNA repair protein AlkB, at 7,170 to 7,790
_00009
CCNA_00010: CCNA_00010 - chaperone protein DnaK, at 8,165 to 10,060
_00010
CCNA_00011: CCNA_00011 - chaperone protein DnaJ, at 10,223 to 11,380
_00011
Position (kb) 8
9
10
11 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 7.185 kb on - strand at 7.193 kb on + strand at 7.198 kb on + strand at 7.227 kb on + strand at 7.279 kb on + strand, within CCNA_00009 at 7.287 kb on - strand, within CCNA_00009 at 7.299 kb on - strand, within CCNA_00009 at 7.354 kb on + strand, within CCNA_00009 at 7.359 kb on + strand, within CCNA_00009 at 7.367 kb on - strand, within CCNA_00009 at 7.377 kb on - strand, within CCNA_00009 at 7.384 kb on + strand, within CCNA_00009 at 7.440 kb on - strand, within CCNA_00009 at 7.459 kb on + strand, within CCNA_00009 at 7.467 kb on - strand, within CCNA_00009 at 7.467 kb on - strand, within CCNA_00009 at 7.497 kb on + strand, within CCNA_00009 at 7.497 kb on + strand, within CCNA_00009 at 7.505 kb on - strand at 7.505 kb on - strand, within CCNA_00009 at 7.507 kb on + strand, within CCNA_00009 at 7.507 kb on + strand, within CCNA_00009 at 7.507 kb on + strand, within CCNA_00009 at 7.526 kb on - strand, within CCNA_00009 at 7.548 kb on - strand, within CCNA_00009 at 7.548 kb on - strand, within CCNA_00009 at 7.566 kb on + strand, within CCNA_00009 at 7.603 kb on - strand, within CCNA_00009 at 7.622 kb on + strand, within CCNA_00009 at 7.643 kb on + strand, within CCNA_00009 at 7.657 kb on + strand, within CCNA_00009 at 7.657 kb on + strand, within CCNA_00009 at 7.665 kb on - strand, within CCNA_00009 at 7.665 kb on - strand, within CCNA_00009 at 7.665 kb on - strand, within CCNA_00009 at 7.665 kb on - strand, within CCNA_00009 at 7.692 kb on + strand, within CCNA_00009 at 7.692 kb on + strand, within CCNA_00009 at 7.700 kb on - strand, within CCNA_00009 at 7.700 kb on - strand, within CCNA_00009 at 7.700 kb on - strand, within CCNA_00009 at 7.742 kb on - strand at 7.758 kb on + strand at 7.759 kb on - strand at 7.759 kb on - strand at 7.763 kb on + strand at 7.770 kb on + strand at 7.796 kb on - strand at 7.807 kb on + strand at 7.930 kb on + strand at 7.930 kb on + strand at 7.931 kb on + strand at 7.938 kb on - strand at 7.938 kb on - strand at 7.938 kb on - strand at 7.938 kb on - strand at 7.939 kb on - strand at 7.939 kb on - strand at 7.958 kb on - strand at 7.989 kb on - strand at 7.999 kb on + strand at 8.002 kb on - strand at 8.039 kb on + strand at 8.039 kb on + strand at 8.047 kb on - strand at 8.055 kb on - strand at 8.110 kb on + strand at 8.140 kb on + strand at 8.140 kb on + strand at 8.140 kb on + strand at 8.140 kb on + strand at 8.148 kb on - strand at 8.148 kb on - strand at 8.165 kb on - strand at 9.904 kb on + strand at 9.928 kb on + strand at 10.006 kb on - strand at 10.054 kb on + strand at 10.115 kb on + strand at 10.145 kb on + strand at 10.152 kb on + strand at 10.157 kb on + strand at 10.759 kb on - strand, within CCNA_00011 at 10.963 kb on + strand, within CCNA_00011 at 11.012 kb on + strand, within CCNA_00011 at 11.057 kb on + strand, within CCNA_00011
Per-strain Table
Position Strand Gene LocusTag Fraction PYE 0.5x 4C survival rep1 58 days remove 7,185 - +0.6 7,193 + +2.2 7,198 + -0.6 7,227 + -0.5 7,279 + CCNA_00009 0.18 +0.0 7,287 - CCNA_00009 0.19 +0.5 7,299 - CCNA_00009 0.21 -0.6 7,354 + CCNA_00009 0.30 -0.2 7,359 + CCNA_00009 0.30 +0.2 7,367 - CCNA_00009 0.32 -2.0 7,377 - CCNA_00009 0.33 +0.4 7,384 + CCNA_00009 0.34 -2.5 7,440 - CCNA_00009 0.43 +0.4 7,459 + CCNA_00009 0.47 -1.1 7,467 - CCNA_00009 0.48 +0.8 7,467 - CCNA_00009 0.48 +1.5 7,497 + CCNA_00009 0.53 -0.7 7,497 + CCNA_00009 0.53 -0.8 7,505 - +0.0 7,505 - CCNA_00009 0.54 +0.5 7,507 + CCNA_00009 0.54 +1.3 7,507 + CCNA_00009 0.54 +0.9 7,507 + CCNA_00009 0.54 +0.6 7,526 - CCNA_00009 0.57 -2.4 7,548 - CCNA_00009 0.61 -0.1 7,548 - CCNA_00009 0.61 +0.4 7,566 + CCNA_00009 0.64 +0.1 7,603 - CCNA_00009 0.70 -2.3 7,622 + CCNA_00009 0.73 -1.4 7,643 + CCNA_00009 0.76 -2.5 7,657 + CCNA_00009 0.78 +0.9 7,657 + CCNA_00009 0.78 -1.4 7,665 - CCNA_00009 0.80 -1.6 7,665 - CCNA_00009 0.80 -0.5 7,665 - CCNA_00009 0.80 +0.0 7,665 - CCNA_00009 0.80 -1.7 7,692 + CCNA_00009 0.84 -1.8 7,692 + CCNA_00009 0.84 -3.1 7,700 - CCNA_00009 0.85 -0.4 7,700 - CCNA_00009 0.85 -0.7 7,700 - CCNA_00009 0.85 -0.0 7,742 - -2.4 7,758 + +0.9 7,759 - -2.2 7,759 - +1.2 7,763 + +0.1 7,770 + +0.1 7,796 - -0.7 7,807 + -1.0 7,930 + -0.8 7,930 + +0.9 7,931 + -2.4 7,938 - -0.6 7,938 - +1.4 7,938 - -0.3 7,938 - -0.9 7,939 - +0.1 7,939 - +0.0 7,958 - +0.6 7,989 - +0.8 7,999 + +1.5 8,002 - -1.6 8,039 + +1.4 8,039 + +1.0 8,047 - +1.1 8,055 - +0.2 8,110 + -2.3 8,140 + +1.5 8,140 + +0.4 8,140 + +0.3 8,140 + -3.7 8,148 - +1.1 8,148 - +1.6 8,165 - +0.3 9,904 + -0.6 9,928 + +0.4 10,006 - -0.0 10,054 + +2.2 10,115 + +1.9 10,145 + +3.0 10,152 + +1.1 10,157 + +1.2 10,759 - CCNA_00011 0.46 -0.8 10,963 + CCNA_00011 0.64 -1.0 11,012 + CCNA_00011 0.68 -2.1 11,057 + CCNA_00011 0.72 -1.0
Or see this region's nucleotide sequence