Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS26565

Experiment: copper (II) chloride 3 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS26560 and BWI76_RS26565 are separated by 33 nucleotidesBWI76_RS26565 and BWI76_RS26570 are separated by 230 nucleotides BWI76_RS26560: BWI76_RS26560 - sigma-54-dependent Fis family transcriptional regulator, at 5,496,758 to 5,498,641 _RS26560 BWI76_RS26565: BWI76_RS26565 - membrane protein, at 5,498,675 to 5,499,871 _RS26565 BWI76_RS26570: BWI76_RS26570 - anion permease, at 5,500,102 to 5,501,598 _RS26570 Position (kb) 5498 5499 5500Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5497.709 kb on + strand, within BWI76_RS26560at 5497.712 kb on - strandat 5497.714 kb on + strand, within BWI76_RS26560at 5497.714 kb on + strand, within BWI76_RS26560at 5497.714 kb on + strand, within BWI76_RS26560at 5497.722 kb on - strand, within BWI76_RS26560at 5497.761 kb on + strand, within BWI76_RS26560at 5497.769 kb on - strandat 5497.799 kb on - strand, within BWI76_RS26560at 5497.803 kb on + strand, within BWI76_RS26560at 5497.826 kb on + strand, within BWI76_RS26560at 5497.827 kb on + strand, within BWI76_RS26560at 5497.832 kb on - strand, within BWI76_RS26560at 5497.834 kb on - strand, within BWI76_RS26560at 5497.834 kb on - strand, within BWI76_RS26560at 5497.834 kb on - strand, within BWI76_RS26560at 5497.884 kb on + strand, within BWI76_RS26560at 5497.886 kb on + strand, within BWI76_RS26560at 5497.887 kb on - strand, within BWI76_RS26560at 5497.893 kb on - strand, within BWI76_RS26560at 5497.893 kb on - strand, within BWI76_RS26560at 5497.894 kb on - strand, within BWI76_RS26560at 5497.910 kb on + strand, within BWI76_RS26560at 5497.910 kb on + strand, within BWI76_RS26560at 5497.910 kb on + strand, within BWI76_RS26560at 5497.910 kb on + strand, within BWI76_RS26560at 5497.918 kb on - strand, within BWI76_RS26560at 5497.918 kb on - strand, within BWI76_RS26560at 5497.939 kb on - strand, within BWI76_RS26560at 5497.939 kb on - strand, within BWI76_RS26560at 5497.977 kb on - strand, within BWI76_RS26560at 5497.979 kb on + strand, within BWI76_RS26560at 5497.987 kb on - strand, within BWI76_RS26560at 5497.989 kb on + strand, within BWI76_RS26560at 5498.028 kb on + strand, within BWI76_RS26560at 5498.035 kb on + strand, within BWI76_RS26560at 5498.043 kb on - strand, within BWI76_RS26560at 5498.043 kb on - strand, within BWI76_RS26560at 5498.043 kb on - strand, within BWI76_RS26560at 5498.043 kb on - strand, within BWI76_RS26560at 5498.092 kb on + strand, within BWI76_RS26560at 5498.143 kb on - strand, within BWI76_RS26560at 5498.147 kb on + strand, within BWI76_RS26560at 5498.164 kb on + strand, within BWI76_RS26560at 5498.174 kb on + strand, within BWI76_RS26560at 5498.174 kb on + strand, within BWI76_RS26560at 5498.174 kb on + strand, within BWI76_RS26560at 5498.224 kb on - strand, within BWI76_RS26560at 5498.238 kb on + strand, within BWI76_RS26560at 5498.435 kb on - strand, within BWI76_RS26560at 5498.457 kb on + strandat 5498.600 kb on + strandat 5498.613 kb on + strandat 5498.613 kb on + strandat 5498.628 kb on + strandat 5498.664 kb on - strandat 5498.688 kb on + strandat 5498.696 kb on - strandat 5498.705 kb on + strandat 5498.706 kb on + strandat 5498.727 kb on + strandat 5498.783 kb on + strandat 5498.791 kb on - strandat 5498.806 kb on + strand, within BWI76_RS26565at 5498.851 kb on + strand, within BWI76_RS26565at 5498.875 kb on - strand, within BWI76_RS26565at 5498.948 kb on - strand, within BWI76_RS26565at 5498.950 kb on + strand, within BWI76_RS26565at 5498.958 kb on - strand, within BWI76_RS26565at 5499.346 kb on + strand, within BWI76_RS26565at 5499.354 kb on - strand, within BWI76_RS26565at 5499.455 kb on - strand, within BWI76_RS26565at 5499.792 kb on + strandat 5499.864 kb on - strandat 5499.864 kb on - strandat 5499.893 kb on - strandat 5500.097 kb on + strandat 5500.318 kb on + strand, within BWI76_RS26570at 5500.804 kb on + strand, within BWI76_RS26570at 5500.822 kb on - strand, within BWI76_RS26570at 5500.844 kb on + strand, within BWI76_RS26570

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 3 mM
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5,497,709 + BWI76_RS26560 0.50 +0.9
5,497,712 - +1.0
5,497,714 + BWI76_RS26560 0.51 -0.3
5,497,714 + BWI76_RS26560 0.51 -0.9
5,497,714 + BWI76_RS26560 0.51 +1.4
5,497,722 - BWI76_RS26560 0.51 +0.1
5,497,761 + BWI76_RS26560 0.53 +0.4
5,497,769 - -0.4
5,497,799 - BWI76_RS26560 0.55 +0.7
5,497,803 + BWI76_RS26560 0.55 -0.3
5,497,826 + BWI76_RS26560 0.57 -0.8
5,497,827 + BWI76_RS26560 0.57 -1.6
5,497,832 - BWI76_RS26560 0.57 -0.6
5,497,834 - BWI76_RS26560 0.57 +0.4
5,497,834 - BWI76_RS26560 0.57 +0.4
5,497,834 - BWI76_RS26560 0.57 +0.4
5,497,884 + BWI76_RS26560 0.60 +0.9
5,497,886 + BWI76_RS26560 0.60 +0.3
5,497,887 - BWI76_RS26560 0.60 +0.2
5,497,893 - BWI76_RS26560 0.60 +0.4
5,497,893 - BWI76_RS26560 0.60 -0.1
5,497,894 - BWI76_RS26560 0.60 -0.0
5,497,910 + BWI76_RS26560 0.61 +0.8
5,497,910 + BWI76_RS26560 0.61 -0.0
5,497,910 + BWI76_RS26560 0.61 -0.3
5,497,910 + BWI76_RS26560 0.61 -0.4
5,497,918 - BWI76_RS26560 0.62 +0.6
5,497,918 - BWI76_RS26560 0.62 +1.6
5,497,939 - BWI76_RS26560 0.63 -1.3
5,497,939 - BWI76_RS26560 0.63 -0.7
5,497,977 - BWI76_RS26560 0.65 +0.6
5,497,979 + BWI76_RS26560 0.65 -3.0
5,497,987 - BWI76_RS26560 0.65 -0.4
5,497,989 + BWI76_RS26560 0.65 -0.2
5,498,028 + BWI76_RS26560 0.67 +0.4
5,498,035 + BWI76_RS26560 0.68 +0.1
5,498,043 - BWI76_RS26560 0.68 -0.2
5,498,043 - BWI76_RS26560 0.68 +0.1
5,498,043 - BWI76_RS26560 0.68 -0.2
5,498,043 - BWI76_RS26560 0.68 +0.1
5,498,092 + BWI76_RS26560 0.71 +1.4
5,498,143 - BWI76_RS26560 0.74 -0.4
5,498,147 + BWI76_RS26560 0.74 +0.4
5,498,164 + BWI76_RS26560 0.75 +0.4
5,498,174 + BWI76_RS26560 0.75 +0.4
5,498,174 + BWI76_RS26560 0.75 -0.2
5,498,174 + BWI76_RS26560 0.75 +0.3
5,498,224 - BWI76_RS26560 0.78 +1.4
5,498,238 + BWI76_RS26560 0.79 +0.4
5,498,435 - BWI76_RS26560 0.89 -0.7
5,498,457 + +1.2
5,498,600 + +0.1
5,498,613 + +0.0
5,498,613 + +0.5
5,498,628 + -0.3
5,498,664 - +0.4
5,498,688 + -0.3
5,498,696 - +0.9
5,498,705 + -0.1
5,498,706 + +0.5
5,498,727 + -2.0
5,498,783 + -0.2
5,498,791 - -1.2
5,498,806 + BWI76_RS26565 0.11 -0.0
5,498,851 + BWI76_RS26565 0.15 -0.3
5,498,875 - BWI76_RS26565 0.17 +1.1
5,498,948 - BWI76_RS26565 0.23 +0.2
5,498,950 + BWI76_RS26565 0.23 +1.5
5,498,958 - BWI76_RS26565 0.24 +0.4
5,499,346 + BWI76_RS26565 0.56 +1.8
5,499,354 - BWI76_RS26565 0.57 +0.2
5,499,455 - BWI76_RS26565 0.65 -0.3
5,499,792 + +0.5
5,499,864 - -0.1
5,499,864 - -0.6
5,499,893 - +0.1
5,500,097 + +0.8
5,500,318 + BWI76_RS26570 0.14 -2.4
5,500,804 + BWI76_RS26570 0.47 -1.6
5,500,822 - BWI76_RS26570 0.48 -1.1
5,500,844 + BWI76_RS26570 0.50 -0.4

Or see this region's nucleotide sequence