Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS17005

Experiment: copper (II) chloride 3 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS16995 and BWI76_RS17000 are separated by 2 nucleotidesBWI76_RS17000 and BWI76_RS17005 are separated by 442 nucleotidesBWI76_RS17005 and BWI76_RS17010 are separated by 11 nucleotidesBWI76_RS17010 and BWI76_RS17015 are separated by 2 nucleotides BWI76_RS16995: BWI76_RS16995 - Fe-S cluster assembly protein SufB, at 3,524,329 to 3,525,816 _RS16995 BWI76_RS17000: BWI76_RS17000 - Fe-S cluster assembly scaffold SufA, at 3,525,819 to 3,526,196 _RS17000 BWI76_RS17005: BWI76_RS17005 - hypothetical protein, at 3,526,639 to 3,527,151 _RS17005 BWI76_RS17010: BWI76_RS17010 - fimbrial protein, at 3,527,163 to 3,528,110 _RS17010 BWI76_RS17015: BWI76_RS17015 - fimbrial assembly protein, at 3,528,113 to 3,530,656 _RS17015 Position (kb) 3526 3527 3528Strain fitness (log2 ratio) -1 0 1at 3525.897 kb on + strand, within BWI76_RS17000at 3525.998 kb on - strand, within BWI76_RS17000at 3526.143 kb on - strand, within BWI76_RS17000at 3526.205 kb on + strandat 3526.459 kb on + strandat 3526.630 kb on - strandat 3526.671 kb on + strandat 3526.854 kb on + strand, within BWI76_RS17005at 3526.958 kb on + strand, within BWI76_RS17005at 3526.965 kb on + strand, within BWI76_RS17005at 3527.044 kb on + strand, within BWI76_RS17005at 3527.050 kb on + strand, within BWI76_RS17005at 3527.188 kb on + strandat 3527.203 kb on + strandat 3527.255 kb on + strandat 3527.344 kb on + strand, within BWI76_RS17010at 3527.372 kb on - strand, within BWI76_RS17010at 3527.391 kb on + strand, within BWI76_RS17010at 3527.606 kb on + strand, within BWI76_RS17010at 3527.614 kb on - strand, within BWI76_RS17010at 3527.702 kb on - strand, within BWI76_RS17010at 3527.712 kb on - strand, within BWI76_RS17010at 3527.748 kb on - strand, within BWI76_RS17010at 3527.870 kb on + strand, within BWI76_RS17010at 3527.905 kb on - strand, within BWI76_RS17010at 3527.987 kb on + strand, within BWI76_RS17010at 3527.990 kb on + strand, within BWI76_RS17010at 3527.995 kb on - strand, within BWI76_RS17010at 3528.001 kb on + strand, within BWI76_RS17010at 3528.001 kb on + strand, within BWI76_RS17010at 3528.050 kb on - strandat 3528.055 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 3 mM
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3,525,897 + BWI76_RS17000 0.21 -0.3
3,525,998 - BWI76_RS17000 0.47 -1.2
3,526,143 - BWI76_RS17000 0.86 +0.0
3,526,205 + +0.6
3,526,459 + +0.1
3,526,630 - +0.2
3,526,671 + +0.1
3,526,854 + BWI76_RS17005 0.42 +0.4
3,526,958 + BWI76_RS17005 0.62 +0.1
3,526,965 + BWI76_RS17005 0.64 +0.3
3,527,044 + BWI76_RS17005 0.79 +0.6
3,527,050 + BWI76_RS17005 0.80 +0.8
3,527,188 + +0.1
3,527,203 + +0.1
3,527,255 + +0.1
3,527,344 + BWI76_RS17010 0.19 +0.3
3,527,372 - BWI76_RS17010 0.22 -0.3
3,527,391 + BWI76_RS17010 0.24 -0.1
3,527,606 + BWI76_RS17010 0.47 -0.5
3,527,614 - BWI76_RS17010 0.48 +0.4
3,527,702 - BWI76_RS17010 0.57 +0.5
3,527,712 - BWI76_RS17010 0.58 +0.5
3,527,748 - BWI76_RS17010 0.62 -0.8
3,527,870 + BWI76_RS17010 0.75 +0.1
3,527,905 - BWI76_RS17010 0.78 +0.5
3,527,987 + BWI76_RS17010 0.87 -0.3
3,527,990 + BWI76_RS17010 0.87 +0.2
3,527,995 - BWI76_RS17010 0.88 +0.2
3,528,001 + BWI76_RS17010 0.88 +0.6
3,528,001 + BWI76_RS17010 0.88 +0.1
3,528,050 - -0.1
3,528,055 + -0.1

Or see this region's nucleotide sequence