Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_3161

Experiment: Defined MoLS4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_3159 and DvMF_3160 are separated by 339 nucleotidesDvMF_3160 and DvMF_3161 are separated by 4 nucleotidesDvMF_3161 and DvMF_3162 are separated by 138 nucleotides DvMF_3159: DvMF_3159 - protein of unknown function DUF610 YibQ (RefSeq), at 3,984,270 to 3,985,901 _3159 DvMF_3160: DvMF_3160 - Nucleoside-diphosphate kinase (RefSeq), at 3,986,241 to 3,986,660 _3160 DvMF_3161: DvMF_3161 - pyrroline-5-carboxylate reductase (EC 1.5.1.2) (from data), at 3,986,665 to 3,987,474 _3161 DvMF_3162: DvMF_3162 - Smr protein/MutS2 (RefSeq), at 3,987,613 to 3,988,965 _3162 Position (kb) 3986 3987 3988Strain fitness (log2 ratio) -7 -6 -5 -4 -3 -2 -1 0 1 2at 3985.831 kb on + strandat 3985.969 kb on + strandat 3985.971 kb on + strandat 3986.149 kb on + strandat 3986.170 kb on - strandat 3986.175 kb on - strandat 3986.934 kb on + strand, within DvMF_3161at 3987.042 kb on + strand, within DvMF_3161at 3987.050 kb on - strand, within DvMF_3161at 3987.191 kb on + strand, within DvMF_3161at 3987.276 kb on + strand, within DvMF_3161at 3987.739 kb on - strandat 3987.786 kb on - strand, within DvMF_3162at 3987.868 kb on - strand, within DvMF_3162at 3987.873 kb on - strand, within DvMF_3162at 3987.930 kb on + strand, within DvMF_3162at 3987.952 kb on + strand, within DvMF_3162at 3988.155 kb on + strand, within DvMF_3162

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Per-strain Table

Position Strand Gene LocusTag Fraction Defined MoLS4
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3,985,831 + -0.4
3,985,969 + -0.4
3,985,971 + -0.0
3,986,149 + +2.1
3,986,170 - -0.1
3,986,175 - -0.4
3,986,934 + DvMF_3161 0.33 -7.1
3,987,042 + DvMF_3161 0.47 -3.1
3,987,050 - DvMF_3161 0.48 -6.2
3,987,191 + DvMF_3161 0.65 -3.0
3,987,276 + DvMF_3161 0.75 -5.9
3,987,739 - -0.2
3,987,786 - DvMF_3162 0.13 -0.4
3,987,868 - DvMF_3162 0.19 +0.7
3,987,873 - DvMF_3162 0.19 -0.4
3,987,930 + DvMF_3162 0.23 +0.1
3,987,952 + DvMF_3162 0.25 -0.6
3,988,155 + DvMF_3162 0.40 -0.2

Or see this region's nucleotide sequence