Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_3118

Experiment: Defined MoLS4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_3116 and DvMF_3117 are separated by 167 nucleotidesDvMF_3117 and DvMF_3118 are separated by 3 nucleotidesDvMF_3118 and DvMF_3119 are separated by 200 nucleotides DvMF_3116: DvMF_3116 - methyl-accepting chemotaxis sensory transducer with Cache sensor (RefSeq), at 3,932,496 to 3,934,916 _3116 DvMF_3117: DvMF_3117 - hypothetical protein (RefSeq), at 3,935,084 to 3,935,626 _3117 DvMF_3118: DvMF_3118 - Gamma-glutamyltransferase (RefSeq), at 3,935,630 to 3,937,249 _3118 DvMF_3119: DvMF_3119 - protein of unknown function DUF181 (RefSeq), at 3,937,450 to 3,939,222 _3119 Position (kb) 3935 3936 3937 3938Strain fitness (log2 ratio) -1 0 1at 3934.697 kb on + strandat 3934.870 kb on + strandat 3934.922 kb on + strandat 3935.003 kb on + strandat 3935.104 kb on + strandat 3935.312 kb on - strand, within DvMF_3117at 3935.662 kb on + strandat 3935.719 kb on - strandat 3936.037 kb on + strand, within DvMF_3118at 3936.314 kb on - strand, within DvMF_3118at 3936.541 kb on - strand, within DvMF_3118at 3936.694 kb on + strand, within DvMF_3118at 3936.782 kb on + strand, within DvMF_3118at 3936.854 kb on + strand, within DvMF_3118at 3936.955 kb on + strand, within DvMF_3118at 3936.967 kb on + strand, within DvMF_3118at 3937.183 kb on - strandat 3937.281 kb on + strandat 3937.325 kb on - strandat 3937.422 kb on + strandat 3937.630 kb on - strand, within DvMF_3119at 3937.969 kb on + strand, within DvMF_3119

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Per-strain Table

Position Strand Gene LocusTag Fraction Defined MoLS4
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3,934,697 + -0.6
3,934,870 + -0.4
3,934,922 + -0.2
3,935,003 + +0.0
3,935,104 + -0.6
3,935,312 - DvMF_3117 0.42 -0.0
3,935,662 + -0.4
3,935,719 - -0.3
3,936,037 + DvMF_3118 0.25 -0.8
3,936,314 - DvMF_3118 0.42 -0.3
3,936,541 - DvMF_3118 0.56 +0.1
3,936,694 + DvMF_3118 0.66 -0.4
3,936,782 + DvMF_3118 0.71 -0.4
3,936,854 + DvMF_3118 0.76 -0.6
3,936,955 + DvMF_3118 0.82 -0.5
3,936,967 + DvMF_3118 0.83 -0.4
3,937,183 - -0.3
3,937,281 + +0.2
3,937,325 - -0.5
3,937,422 + -0.7
3,937,630 - DvMF_3119 0.10 -1.4
3,937,969 + DvMF_3119 0.29 +0.4

Or see this region's nucleotide sequence