Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_3015

Experiment: Defined MoLS4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_3014 and DvMF_3015 are separated by 228 nucleotidesDvMF_3015 and DvMF_3016 overlap by 8 nucleotides DvMF_3014: DvMF_3014 - hypothetical protein (RefSeq), at 3,803,116 to 3,803,847 _3014 DvMF_3015: DvMF_3015 - aminotransferase class I and II (RefSeq), at 3,804,076 to 3,805,347 _3015 DvMF_3016: DvMF_3016 - glycosyl transferase group 1 (RefSeq), at 3,805,340 to 3,806,461 _3016 Position (kb) 3804 3805 3806Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3803.163 kb on - strandat 3803.423 kb on + strand, within DvMF_3014at 3803.493 kb on - strand, within DvMF_3014at 3803.817 kb on + strandat 3804.023 kb on + strandat 3804.107 kb on + strandat 3804.362 kb on + strand, within DvMF_3015at 3804.688 kb on + strand, within DvMF_3015at 3804.779 kb on - strand, within DvMF_3015at 3804.892 kb on - strand, within DvMF_3015at 3804.914 kb on + strand, within DvMF_3015at 3805.256 kb on + strandat 3805.490 kb on - strand, within DvMF_3016at 3805.694 kb on - strand, within DvMF_3016at 3805.737 kb on - strand, within DvMF_3016at 3805.804 kb on - strand, within DvMF_3016at 3805.857 kb on - strand, within DvMF_3016at 3805.870 kb on + strand, within DvMF_3016at 3805.892 kb on + strand, within DvMF_3016at 3805.942 kb on - strand, within DvMF_3016at 3806.139 kb on - strand, within DvMF_3016at 3806.258 kb on - strand, within DvMF_3016at 3806.304 kb on + strand, within DvMF_3016at 3806.312 kb on - strand, within DvMF_3016at 3806.312 kb on - strand, within DvMF_3016at 3806.335 kb on + strand, within DvMF_3016at 3806.343 kb on - strand, within DvMF_3016

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Defined MoLS4
remove
3,803,163 - -0.6
3,803,423 + DvMF_3014 0.42 +1.4
3,803,493 - DvMF_3014 0.52 -0.2
3,803,817 + -0.9
3,804,023 + -0.6
3,804,107 + -0.7
3,804,362 + DvMF_3015 0.22 -1.4
3,804,688 + DvMF_3015 0.48 -1.7
3,804,779 - DvMF_3015 0.55 -2.1
3,804,892 - DvMF_3015 0.64 -1.4
3,804,914 + DvMF_3015 0.66 +1.8
3,805,256 + -0.8
3,805,490 - DvMF_3016 0.13 -2.7
3,805,694 - DvMF_3016 0.32 -0.9
3,805,737 - DvMF_3016 0.35 -2.2
3,805,804 - DvMF_3016 0.41 -0.7
3,805,857 - DvMF_3016 0.46 -2.3
3,805,870 + DvMF_3016 0.47 -2.0
3,805,892 + DvMF_3016 0.49 -0.8
3,805,942 - DvMF_3016 0.54 -0.3
3,806,139 - DvMF_3016 0.71 -2.8
3,806,258 - DvMF_3016 0.82 -1.3
3,806,304 + DvMF_3016 0.86 -1.3
3,806,312 - DvMF_3016 0.87 -1.6
3,806,312 - DvMF_3016 0.87 -0.1
3,806,335 + DvMF_3016 0.89 -0.7
3,806,343 - DvMF_3016 0.89 -1.8

Or see this region's nucleotide sequence