Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2929

Experiment: Defined MoLS4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2928 and DvMF_2929 are separated by 183 nucleotidesDvMF_2929 and DvMF_2930 are separated by 153 nucleotides DvMF_2928: DvMF_2928 - Methicillin resistance protein (RefSeq), at 3,699,108 to 3,700,340 _2928 DvMF_2929: DvMF_2929 - hydroxypyruvate isomerase (RefSeq), at 3,700,524 to 3,701,315 _2929 DvMF_2930: DvMF_2930 - transcriptional regulator, GntR family (RefSeq), at 3,701,469 to 3,702,350 _2930 Position (kb) 3700 3701 3702Strain fitness (log2 ratio) -1 0 1 2at 3699.526 kb on - strand, within DvMF_2928at 3699.562 kb on - strand, within DvMF_2928at 3699.572 kb on + strand, within DvMF_2928at 3699.651 kb on - strand, within DvMF_2928at 3699.704 kb on + strand, within DvMF_2928at 3699.712 kb on - strand, within DvMF_2928at 3699.798 kb on - strand, within DvMF_2928at 3699.849 kb on + strand, within DvMF_2928at 3699.857 kb on - strand, within DvMF_2928at 3699.869 kb on + strand, within DvMF_2928at 3699.976 kb on - strand, within DvMF_2928at 3700.039 kb on - strand, within DvMF_2928at 3700.066 kb on - strand, within DvMF_2928at 3700.066 kb on - strand, within DvMF_2928at 3700.066 kb on - strand, within DvMF_2928at 3700.289 kb on + strandat 3700.398 kb on + strandat 3700.402 kb on - strandat 3700.435 kb on - strandat 3700.530 kb on - strandat 3701.037 kb on - strand, within DvMF_2929at 3701.060 kb on - strand, within DvMF_2929at 3701.088 kb on - strand, within DvMF_2929at 3701.159 kb on - strand, within DvMF_2929at 3701.321 kb on + strandat 3701.360 kb on - strandat 3701.431 kb on - strandat 3701.476 kb on + strandat 3701.597 kb on + strand, within DvMF_2930at 3701.605 kb on - strand, within DvMF_2930at 3701.624 kb on + strand, within DvMF_2930at 3702.089 kb on + strand, within DvMF_2930at 3702.161 kb on - strand, within DvMF_2930at 3702.263 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Defined MoLS4
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3,699,526 - DvMF_2928 0.34 +0.2
3,699,562 - DvMF_2928 0.37 -0.4
3,699,572 + DvMF_2928 0.38 -0.5
3,699,651 - DvMF_2928 0.44 +0.4
3,699,704 + DvMF_2928 0.48 -0.2
3,699,712 - DvMF_2928 0.49 -0.3
3,699,798 - DvMF_2928 0.56 -0.4
3,699,849 + DvMF_2928 0.60 -0.1
3,699,857 - DvMF_2928 0.61 -0.3
3,699,869 + DvMF_2928 0.62 -0.3
3,699,976 - DvMF_2928 0.70 -0.5
3,700,039 - DvMF_2928 0.76 +0.5
3,700,066 - DvMF_2928 0.78 -0.4
3,700,066 - DvMF_2928 0.78 -0.3
3,700,066 - DvMF_2928 0.78 -0.2
3,700,289 + -0.7
3,700,398 + +0.4
3,700,402 - -0.5
3,700,435 - -1.6
3,700,530 - -0.6
3,701,037 - DvMF_2929 0.65 +2.1
3,701,060 - DvMF_2929 0.68 -0.5
3,701,088 - DvMF_2929 0.71 -0.3
3,701,159 - DvMF_2929 0.80 -0.8
3,701,321 + -0.3
3,701,360 - -0.3
3,701,431 - -0.5
3,701,476 + -0.6
3,701,597 + DvMF_2930 0.15 -0.3
3,701,605 - DvMF_2930 0.15 -0.4
3,701,624 + DvMF_2930 0.18 -0.5
3,702,089 + DvMF_2930 0.70 -0.5
3,702,161 - DvMF_2930 0.78 -0.4
3,702,263 - -0.3

Or see this region's nucleotide sequence