Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2816

Experiment: Defined MoLS4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2815 and DvMF_2816 are separated by 139 nucleotides DvMF_2815: DvMF_2815 - phosphoribosylaminoimidazole-succinocarboxamide synthase (RefSeq), at 3,559,731 to 3,560,627 _2815 DvMF_2816: DvMF_2816 - short-chain dehydrogenase/reductase SDR (RefSeq), at 3,560,767 to 3,561,531 _2816 Position (kb) 3560 3561 3562Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3559.896 kb on + strand, within DvMF_2815at 3560.043 kb on + strand, within DvMF_2815at 3560.132 kb on - strand, within DvMF_2815at 3560.313 kb on - strand, within DvMF_2815at 3562.037 kb on - strandat 3562.091 kb on + strandat 3562.277 kb on - strandat 3562.448 kb on + strandat 3562.448 kb on + strandat 3562.466 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Defined MoLS4
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3,559,896 + DvMF_2815 0.18 -2.6
3,560,043 + DvMF_2815 0.35 -1.2
3,560,132 - DvMF_2815 0.45 -4.6
3,560,313 - DvMF_2815 0.65 -2.5
3,562,037 - +0.6
3,562,091 + -1.3
3,562,277 - -0.2
3,562,448 + -0.3
3,562,448 + -0.2
3,562,466 - -0.0

Or see this region's nucleotide sequence