Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2769

Experiment: Defined MoLS4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2767 and DvMF_2768 are separated by 269 nucleotidesDvMF_2768 and DvMF_2769 are separated by 69 nucleotidesDvMF_2769 and DvMF_2770 are separated by 232 nucleotidesDvMF_2770 and DvMF_2771 are separated by 99 nucleotides DvMF_2767: DvMF_2767 - uroporphyrin-III C-methyltransferase (RefSeq), at 3,500,840 to 3,502,351 _2767 DvMF_2768: DvMF_2768 - MOSC domain containing protein (RefSeq), at 3,502,621 to 3,503,055 _2768 DvMF_2769: DvMF_2769 - phosphoribosylglycinamide formyltransferase (RefSeq), at 3,503,125 to 3,503,808 _2769 DvMF_2770: DvMF_2770 - no description, at 3,504,041 to 3,504,124 _2770 DvMF_2771: DvMF_2771 - Lysine exporter protein (LYSE/YGGA) (RefSeq), at 3,504,224 to 3,504,835 _2771 Position (kb) 3503 3504Strain fitness (log2 ratio) -1 0 1 2at 3502.471 kb on + strandat 3502.497 kb on + strandat 3502.623 kb on - strandat 3503.120 kb on + strandat 3503.327 kb on + strand, within DvMF_2769at 3503.521 kb on - strand, within DvMF_2769at 3503.536 kb on - strand, within DvMF_2769at 3503.739 kb on + strand, within DvMF_2769at 3503.741 kb on + strandat 3504.072 kb on - strand, within DvMF_2770at 3504.180 kb on + strandat 3504.237 kb on - strandat 3504.335 kb on + strand, within DvMF_2771at 3504.343 kb on - strand, within DvMF_2771at 3504.343 kb on - strand, within DvMF_2771at 3504.400 kb on - strand, within DvMF_2771at 3504.400 kb on - strand, within DvMF_2771at 3504.486 kb on - strand, within DvMF_2771at 3504.600 kb on + strand, within DvMF_2771

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Per-strain Table

Position Strand Gene LocusTag Fraction Defined MoLS4
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3,502,471 + -0.0
3,502,497 + -0.6
3,502,623 - -0.4
3,503,120 + -0.2
3,503,327 + DvMF_2769 0.30 -0.7
3,503,521 - DvMF_2769 0.58 -1.5
3,503,536 - DvMF_2769 0.60 -1.5
3,503,739 + DvMF_2769 0.90 -1.7
3,503,741 + -1.4
3,504,072 - DvMF_2770 0.37 +2.0
3,504,180 + -0.0
3,504,237 - -0.2
3,504,335 + DvMF_2771 0.18 -0.5
3,504,343 - DvMF_2771 0.19 +0.0
3,504,343 - DvMF_2771 0.19 -0.5
3,504,400 - DvMF_2771 0.29 +0.3
3,504,400 - DvMF_2771 0.29 -0.4
3,504,486 - DvMF_2771 0.43 -0.2
3,504,600 + DvMF_2771 0.61 -0.3

Or see this region's nucleotide sequence