Experiment: Defined MoLS4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2678 and DvMF_2679 are separated by 294 nucleotides DvMF_2679 and DvMF_2680 are separated by 996 nucleotides
DvMF_2678: DvMF_2678 - PAS/PAC sensor signal transduction histidine kinase (RefSeq), at 3,382,609 to 3,384,705
_2678
DvMF_2679: DvMF_2679 - two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq), at 3,385,000 to 3,386,460
_2679
DvMF_2680: DvMF_2680 - 3,4-dihydroxy-2-butanone 4-phosphate synthase (RefSeq), at 3,387,457 to 3,388,110
_2680
Position (kb)
3384
3385
3386
3387 Strain fitness (log2 ratio)
-1
0
1 at 3384.463 kb on + strand, within DvMF_2678 at 3384.567 kb on - strand at 3384.845 kb on + strand at 3384.876 kb on - strand at 3385.029 kb on + strand at 3385.183 kb on - strand, within DvMF_2679 at 3385.194 kb on + strand, within DvMF_2679 at 3385.396 kb on + strand, within DvMF_2679 at 3385.542 kb on + strand, within DvMF_2679 at 3385.657 kb on + strand, within DvMF_2679 at 3385.670 kb on - strand, within DvMF_2679 at 3385.908 kb on + strand, within DvMF_2679 at 3385.986 kb on + strand, within DvMF_2679 at 3386.471 kb on - strand at 3386.960 kb on + strand at 3387.276 kb on + strand at 3387.314 kb on + strand at 3387.330 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Defined MoLS4 remove 3,384,463 + DvMF_2678 0.88 -0.9 3,384,567 - -0.9 3,384,845 + -0.6 3,384,876 - +0.0 3,385,029 + -1.2 3,385,183 - DvMF_2679 0.13 -1.0 3,385,194 + DvMF_2679 0.13 -0.6 3,385,396 + DvMF_2679 0.27 -1.5 3,385,542 + DvMF_2679 0.37 -0.1 3,385,657 + DvMF_2679 0.45 -1.7 3,385,670 - DvMF_2679 0.46 +0.2 3,385,908 + DvMF_2679 0.62 -1.0 3,385,986 + DvMF_2679 0.67 -1.4 3,386,471 - -0.3 3,386,960 + -0.3 3,387,276 + -0.4 3,387,314 + -0.9 3,387,330 - -0.5
Or see this region's nucleotide sequence