Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2518

Experiment: Defined MoLS4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_2517 and flgG are separated by 298 nucleotidesflgG and DvMF_2519 are separated by 201 nucleotides DvMF_2517: DvMF_2517 - protein of unknown function DUF1078 domain protein (RefSeq), at 3,173,879 to 3,174,658 _2517 DvMF_2518: flgG - flagellar basal body rod protein FlgG (RefSeq), at 3,174,957 to 3,175,739 flgG DvMF_2519: DvMF_2519 - flagella basal body P-ring formation protein FlgA (RefSeq), at 3,175,941 to 3,176,981 _2519 Position (kb) 3174 3175 3176Strain fitness (log2 ratio) -1 0 1at 3174.290 kb on + strand, within DvMF_2517at 3174.314 kb on + strand, within DvMF_2517at 3174.322 kb on - strand, within DvMF_2517at 3174.508 kb on + strand, within DvMF_2517at 3174.511 kb on - strand, within DvMF_2517at 3174.521 kb on - strand, within DvMF_2517at 3174.844 kb on + strandat 3175.194 kb on + strand, within flgGat 3175.290 kb on + strand, within flgGat 3175.436 kb on - strand, within flgGat 3175.554 kb on + strand, within flgGat 3175.601 kb on - strand, within flgGat 3175.887 kb on + strandat 3175.901 kb on - strandat 3176.013 kb on + strandat 3176.168 kb on + strand, within DvMF_2519at 3176.189 kb on + strand, within DvMF_2519at 3176.371 kb on - strand, within DvMF_2519

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Defined MoLS4
remove
3,174,290 + DvMF_2517 0.53 +1.3
3,174,314 + DvMF_2517 0.56 +1.3
3,174,322 - DvMF_2517 0.57 +1.4
3,174,508 + DvMF_2517 0.81 +1.3
3,174,511 - DvMF_2517 0.81 +1.6
3,174,521 - DvMF_2517 0.82 +1.3
3,174,844 + -0.3
3,175,194 + flgG DvMF_2518 0.30 +1.5
3,175,290 + flgG DvMF_2518 0.43 +1.4
3,175,436 - flgG DvMF_2518 0.61 +1.5
3,175,554 + flgG DvMF_2518 0.76 +1.6
3,175,601 - flgG DvMF_2518 0.82 +1.5
3,175,887 + -0.3
3,175,901 - -1.0
3,176,013 + +1.3
3,176,168 + DvMF_2519 0.22 +1.4
3,176,189 + DvMF_2519 0.24 +1.4
3,176,371 - DvMF_2519 0.41 +1.7

Or see this region's nucleotide sequence