Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2515

Experiment: Defined MoLS4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntinfB and DvMF_2514 overlap by 4 nucleotidesDvMF_2514 and nusA are separated by 7 nucleotidesnusA and DvMF_2516 are separated by 23 nucleotides DvMF_2513: infB - translation initiation factor IF-2 (RefSeq), at 3,167,905 to 3,171,144 infB DvMF_2514: DvMF_2514 - hypothetical protein (RefSeq), at 3,171,141 to 3,171,392 _2514 DvMF_2515: nusA - transcription elongation factor NusA (RefSeq), at 3,171,400 to 3,172,731 nusA DvMF_2516: DvMF_2516 - protein of unknown function DUF150 (RefSeq), at 3,172,755 to 3,173,435 _2516 Position (kb) 3171 3172 3173Strain fitness (log2 ratio) -1 0 1at 3171.406 kb on - strandat 3171.677 kb on - strand, within nusAat 3172.752 kb on + strandat 3172.760 kb on - strandat 3172.927 kb on + strand, within DvMF_2516at 3173.170 kb on - strand, within DvMF_2516at 3173.198 kb on + strand, within DvMF_2516at 3173.390 kb on - strandat 3173.390 kb on - strandat 3173.717 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Defined MoLS4
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3,171,406 - -0.6
3,171,677 - nusA DvMF_2515 0.21 -1.1
3,172,752 + -0.0
3,172,760 - +0.0
3,172,927 + DvMF_2516 0.25 +0.1
3,173,170 - DvMF_2516 0.61 -1.4
3,173,198 + DvMF_2516 0.65 -1.5
3,173,390 - -0.4
3,173,390 - -0.6
3,173,717 + -0.3

Or see this region's nucleotide sequence