Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2479

Experiment: Defined MoLS4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2477 and DvMF_2478 overlap by 1 nucleotidesDvMF_2478 and DvMF_2479 are separated by 288 nucleotidesDvMF_2479 and DvMF_2480 are separated by 313 nucleotidesDvMF_2480 and DvMF_2481 are separated by 123 nucleotides DvMF_2477: DvMF_2477 - ABC transporter related (RefSeq), at 3,124,011 to 3,124,793 _2477 DvMF_2478: DvMF_2478 - molybdate ABC transporter, inner membrane subunit (RefSeq), at 3,124,793 to 3,125,500 _2478 DvMF_2479: DvMF_2479 - beta-lactamase domain protein (RefSeq), at 3,125,789 to 3,126,997 _2479 DvMF_2480: DvMF_2480 - Rubredoxin-type Fe(Cys)4 protein (RefSeq), at 3,127,311 to 3,127,469 _2480 DvMF_2481: DvMF_2481 - desulfoferrodoxin (RefSeq), at 3,127,593 to 3,127,967 _2481 Position (kb) 3125 3126 3127Strain fitness (log2 ratio) -1 0 1at 3124.854 kb on + strandat 3124.942 kb on + strand, within DvMF_2478at 3124.952 kb on - strand, within DvMF_2478at 3124.976 kb on + strand, within DvMF_2478at 3125.353 kb on - strand, within DvMF_2478at 3125.446 kb on + strandat 3125.770 kb on + strandat 3125.834 kb on - strandat 3126.056 kb on - strand, within DvMF_2479at 3126.069 kb on + strand, within DvMF_2479at 3126.124 kb on - strand, within DvMF_2479at 3126.182 kb on + strand, within DvMF_2479at 3126.226 kb on + strand, within DvMF_2479at 3126.555 kb on + strand, within DvMF_2479at 3126.604 kb on + strand, within DvMF_2479at 3126.628 kb on - strand, within DvMF_2479at 3126.674 kb on + strand, within DvMF_2479at 3126.821 kb on - strand, within DvMF_2479at 3127.103 kb on + strandat 3127.264 kb on + strandat 3127.284 kb on + strandat 3127.292 kb on - strandat 3127.309 kb on + strandat 3127.359 kb on - strand, within DvMF_2480at 3127.792 kb on - strand, within DvMF_2481at 3127.941 kb on + strandat 3127.941 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Defined MoLS4
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3,124,854 + -0.6
3,124,942 + DvMF_2478 0.21 -0.4
3,124,952 - DvMF_2478 0.22 +0.3
3,124,976 + DvMF_2478 0.26 -0.1
3,125,353 - DvMF_2478 0.79 -0.2
3,125,446 + -0.1
3,125,770 + -0.1
3,125,834 - -0.7
3,126,056 - DvMF_2479 0.22 -0.6
3,126,069 + DvMF_2479 0.23 -0.6
3,126,124 - DvMF_2479 0.28 -0.4
3,126,182 + DvMF_2479 0.33 -0.4
3,126,226 + DvMF_2479 0.36 -1.1
3,126,555 + DvMF_2479 0.63 -0.6
3,126,604 + DvMF_2479 0.67 -0.6
3,126,628 - DvMF_2479 0.69 -0.6
3,126,674 + DvMF_2479 0.73 -0.4
3,126,821 - DvMF_2479 0.85 -0.3
3,127,103 + -0.5
3,127,264 + +0.2
3,127,284 + -0.6
3,127,292 - -0.8
3,127,309 + -0.3
3,127,359 - DvMF_2480 0.30 -0.3
3,127,792 - DvMF_2481 0.53 -0.3
3,127,941 + -0.5
3,127,941 + -0.1

Or see this region's nucleotide sequence