Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2314

Experiment: Defined MoLS4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2313 and DvMF_2314 are separated by 50 nucleotidesDvMF_2314 and DvMF_2315 overlap by 4 nucleotides DvMF_2313: DvMF_2313 - DNA-directed DNA polymerase (RefSeq), at 2,911,502 to 2,912,947 _2313 DvMF_2314: DvMF_2314 - aminotransferase class IV (RefSeq), at 2,912,998 to 2,913,771 _2314 DvMF_2315: DvMF_2315 - Chorismate binding-like protein (RefSeq), at 2,913,768 to 2,915,411 _2315 Position (kb) 2912 2913 2914Strain fitness (log2 ratio) -1 0 1 2at 2912.046 kb on + strand, within DvMF_2313at 2912.111 kb on + strand, within DvMF_2313at 2912.179 kb on + strand, within DvMF_2313at 2912.240 kb on + strand, within DvMF_2313at 2912.394 kb on + strand, within DvMF_2313at 2912.400 kb on + strand, within DvMF_2313at 2912.510 kb on - strand, within DvMF_2313at 2912.980 kb on + strandat 2913.192 kb on - strand, within DvMF_2314at 2913.194 kb on + strand, within DvMF_2314at 2913.796 kb on + strandat 2913.796 kb on + strandat 2913.845 kb on - strandat 2913.899 kb on - strandat 2914.103 kb on + strand, within DvMF_2315at 2914.169 kb on - strand, within DvMF_2315at 2914.228 kb on + strand, within DvMF_2315at 2914.236 kb on - strand, within DvMF_2315at 2914.470 kb on - strand, within DvMF_2315at 2914.478 kb on + strand, within DvMF_2315at 2914.514 kb on + strand, within DvMF_2315at 2914.566 kb on + strand, within DvMF_2315at 2914.757 kb on + strand, within DvMF_2315at 2914.757 kb on + strand, within DvMF_2315

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Per-strain Table

Position Strand Gene LocusTag Fraction Defined MoLS4
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2,912,046 + DvMF_2313 0.38 -0.5
2,912,111 + DvMF_2313 0.42 -0.4
2,912,179 + DvMF_2313 0.47 -0.6
2,912,240 + DvMF_2313 0.51 -0.1
2,912,394 + DvMF_2313 0.62 -0.3
2,912,400 + DvMF_2313 0.62 -0.5
2,912,510 - DvMF_2313 0.70 +0.2
2,912,980 + +0.2
2,913,192 - DvMF_2314 0.25 +2.1
2,913,194 + DvMF_2314 0.25 -0.1
2,913,796 + -0.3
2,913,796 + -0.5
2,913,845 - -0.4
2,913,899 - -0.1
2,914,103 + DvMF_2315 0.20 -0.5
2,914,169 - DvMF_2315 0.24 -0.2
2,914,228 + DvMF_2315 0.28 -0.5
2,914,236 - DvMF_2315 0.28 +0.1
2,914,470 - DvMF_2315 0.43 -0.0
2,914,478 + DvMF_2315 0.43 -0.4
2,914,514 + DvMF_2315 0.45 -0.6
2,914,566 + DvMF_2315 0.49 -0.3
2,914,757 + DvMF_2315 0.60 +0.0
2,914,757 + DvMF_2315 0.60 -0.7

Or see this region's nucleotide sequence