Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2302

Experiment: Defined MoLS4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2301 and DvMF_2302 are separated by 98 nucleotidesDvMF_2302 and DvMF_2303 are separated by 136 nucleotides DvMF_2301: DvMF_2301 - molybdenum cofactor biosynthesis protein C (RefSeq), at 2,891,919 to 2,892,410 _2301 DvMF_2302: DvMF_2302 - Dimethylmenaquinone methyltransferase (RefSeq), at 2,892,509 to 2,893,186 _2302 DvMF_2303: DvMF_2303 - esterase/lipase-like protein (RefSeq), at 2,893,323 to 2,894,333 _2303 Position (kb) 2892 2893 2894Strain fitness (log2 ratio) -2 -1 0 1at 2891.825 kb on + strandat 2891.830 kb on + strandat 2891.830 kb on + strandat 2891.830 kb on + strandat 2891.838 kb on - strandat 2891.840 kb on + strandat 2892.080 kb on + strand, within DvMF_2301at 2892.186 kb on + strand, within DvMF_2301at 2892.308 kb on + strand, within DvMF_2301at 2892.320 kb on + strand, within DvMF_2301at 2892.328 kb on - strand, within DvMF_2301at 2892.328 kb on - strand, within DvMF_2301at 2892.565 kb on + strandat 2892.906 kb on + strand, within DvMF_2302at 2893.020 kb on + strand, within DvMF_2302at 2893.030 kb on - strand, within DvMF_2302at 2893.175 kb on - strandat 2893.257 kb on + strandat 2893.668 kb on + strand, within DvMF_2303at 2893.942 kb on + strand, within DvMF_2303at 2894.119 kb on + strand, within DvMF_2303

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Per-strain Table

Position Strand Gene LocusTag Fraction Defined MoLS4
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2,891,825 + -1.5
2,891,830 + +0.7
2,891,830 + -1.3
2,891,830 + -0.0
2,891,838 - +0.4
2,891,840 + -0.1
2,892,080 + DvMF_2301 0.33 +0.3
2,892,186 + DvMF_2301 0.54 +1.0
2,892,308 + DvMF_2301 0.79 -0.3
2,892,320 + DvMF_2301 0.82 +0.2
2,892,328 - DvMF_2301 0.83 +0.7
2,892,328 - DvMF_2301 0.83 -0.3
2,892,565 + -0.8
2,892,906 + DvMF_2302 0.59 -0.6
2,893,020 + DvMF_2302 0.75 -1.8
2,893,030 - DvMF_2302 0.77 -2.4
2,893,175 - -0.3
2,893,257 + -1.1
2,893,668 + DvMF_2303 0.34 -0.5
2,893,942 + DvMF_2303 0.61 -0.8
2,894,119 + DvMF_2303 0.79 -0.3

Or see this region's nucleotide sequence