Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2295

Experiment: Defined MoLS4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2293 and DvMF_2294 are separated by 649 nucleotidesDvMF_2294 and DvMF_2295 are separated by 6 nucleotidesDvMF_2295 and DvMF_2296 are separated by 256 nucleotidesDvMF_2296 and DvMF_2297 are separated by 39 nucleotides DvMF_2293: DvMF_2293 - PP-loop domain protein (RefSeq), at 2,881,458 to 2,882,204 _2293 DvMF_2294: DvMF_2294 - DNA-directed RNA polymerase, omega subunit (RefSeq), at 2,882,854 to 2,883,081 _2294 DvMF_2295: DvMF_2295 - chaperone protein DnaJ (RefSeq), at 2,883,088 to 2,884,212 _2295 DvMF_2296: DvMF_2296 - hypothetical protein (RefSeq), at 2,884,469 to 2,885,122 _2296 DvMF_2297: DvMF_2297 - hypothetical protein (RefSeq), at 2,885,162 to 2,885,677 _2297 Position (kb) 2883 2884 2885Strain fitness (log2 ratio) -2 -1 0 1at 2882.171 kb on + strandat 2882.179 kb on + strandat 2882.464 kb on - strandat 2882.768 kb on + strandat 2883.112 kb on - strandat 2883.647 kb on + strand, within DvMF_2295at 2883.855 kb on + strand, within DvMF_2295at 2884.034 kb on + strand, within DvMF_2295at 2884.088 kb on + strand, within DvMF_2295at 2884.554 kb on + strand, within DvMF_2296at 2884.640 kb on - strand, within DvMF_2296at 2884.668 kb on - strand, within DvMF_2296at 2884.702 kb on + strand, within DvMF_2296at 2884.735 kb on + strand, within DvMF_2296at 2884.951 kb on - strand, within DvMF_2296at 2885.067 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Defined MoLS4
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2,882,171 + -0.3
2,882,179 + -1.2
2,882,464 - -0.7
2,882,768 + -0.4
2,883,112 - -0.7
2,883,647 + DvMF_2295 0.50 -1.4
2,883,855 + DvMF_2295 0.68 -0.6
2,884,034 + DvMF_2295 0.84 -1.9
2,884,088 + DvMF_2295 0.89 -0.6
2,884,554 + DvMF_2296 0.13 -0.2
2,884,640 - DvMF_2296 0.26 +0.4
2,884,668 - DvMF_2296 0.30 -0.3
2,884,702 + DvMF_2296 0.36 +0.7
2,884,735 + DvMF_2296 0.41 -0.2
2,884,951 - DvMF_2296 0.74 -0.4
2,885,067 + -0.1

Or see this region's nucleotide sequence