Experiment: Defined MoLS4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2171 and DvMF_2172 are separated by 148 nucleotides DvMF_2172 and DvMF_2173 are separated by 368 nucleotides DvMF_2173 and DvMF_2174 are separated by 24 nucleotides
DvMF_2171: DvMF_2171 - hypothetical protein (RefSeq), at 2,709,455 to 2,709,613
_2171
DvMF_2172: DvMF_2172 - DSBA oxidoreductase (RefSeq), at 2,709,762 to 2,710,565
_2172
DvMF_2173: DvMF_2173 - branched-chain amino acid transport (RefSeq), at 2,710,934 to 2,711,260
_2173
DvMF_2174: DvMF_2174 - AzlC family protein (RefSeq), at 2,711,285 to 2,712,133
_2174
Position (kb)
2709
2710
2711 Strain fitness (log2 ratio)
-1
0
1 at 2708.846 kb on + strand at 2709.023 kb on + strand at 2709.090 kb on - strand at 2709.348 kb on + strand at 2709.452 kb on + strand at 2710.190 kb on + strand, within DvMF_2172 at 2710.235 kb on - strand, within DvMF_2172 at 2710.417 kb on + strand, within DvMF_2172 at 2710.524 kb on + strand at 2710.790 kb on - strand at 2710.886 kb on - strand at 2711.284 kb on + strand at 2711.290 kb on + strand at 2711.409 kb on + strand, within DvMF_2174 at 2711.417 kb on - strand, within DvMF_2174 at 2711.417 kb on - strand, within DvMF_2174 at 2711.417 kb on - strand, within DvMF_2174 at 2711.470 kb on + strand, within DvMF_2174
Per-strain Table
Position Strand Gene LocusTag Fraction Defined MoLS4 remove 2,708,846 + -0.6 2,709,023 + -0.1 2,709,090 - -0.4 2,709,348 + -0.4 2,709,452 + -0.4 2,710,190 + DvMF_2172 0.53 +0.5 2,710,235 - DvMF_2172 0.59 +0.5 2,710,417 + DvMF_2172 0.81 +0.5 2,710,524 + +0.3 2,710,790 - -0.1 2,710,886 - -0.4 2,711,284 + -0.5 2,711,290 + +0.3 2,711,409 + DvMF_2174 0.15 +0.5 2,711,417 - DvMF_2174 0.16 -0.5 2,711,417 - DvMF_2174 0.16 -0.1 2,711,417 - DvMF_2174 0.16 -0.1 2,711,470 + DvMF_2174 0.22 -0.8
Or see this region's nucleotide sequence