Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2145

Experiment: Defined MoLS4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2143 and DvMF_2144 are separated by 94 nucleotidesDvMF_2144 and DvMF_2145 overlap by 4 nucleotidesDvMF_2145 and DvMF_2146 are separated by 325 nucleotides DvMF_2143: DvMF_2143 - dihydroorotate dehydrogenase family protein (RefSeq), at 2,669,027 to 2,669,953 _2143 DvMF_2144: DvMF_2144 - GCN5-related N-acetyltransferase (RefSeq), at 2,670,048 to 2,670,587 _2144 DvMF_2145: DvMF_2145 - Protein of unknown function DUF1778 (RefSeq), at 2,670,584 to 2,670,856 _2145 DvMF_2146: DvMF_2146 - delta-1-pyrroline-5-carboxylate dehydrogenase (RefSeq), at 2,671,182 to 2,674,223 _2146 Position (kb) 2670 2671Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2669.657 kb on - strand, within DvMF_2143at 2669.665 kb on + strand, within DvMF_2143at 2669.929 kb on + strandat 2670.045 kb on + strandat 2670.045 kb on + strandat 2670.053 kb on - strandat 2670.053 kb on - strandat 2670.281 kb on + strand, within DvMF_2144at 2670.416 kb on - strand, within DvMF_2144at 2670.755 kb on + strand, within DvMF_2145at 2671.187 kb on - strandat 2671.370 kb on + strandat 2671.456 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Defined MoLS4
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2,669,657 - DvMF_2143 0.68 -4.1
2,669,665 + DvMF_2143 0.69 -0.9
2,669,929 + -0.2
2,670,045 + -0.6
2,670,045 + -0.4
2,670,053 - -0.7
2,670,053 - -0.7
2,670,281 + DvMF_2144 0.43 -0.9
2,670,416 - DvMF_2144 0.68 -0.2
2,670,755 + DvMF_2145 0.63 +0.2
2,671,187 - +0.3
2,671,370 + -0.7
2,671,456 - -0.5

Or see this region's nucleotide sequence