Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2137

Experiment: Defined MoLS4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2135 and DvMF_2136 overlap by 4 nucleotidesDvMF_2136 and DvMF_2137 are separated by 1 nucleotidesDvMF_2137 and DvMF_2138 are separated by 54 nucleotides DvMF_2135: DvMF_2135 - TRAP dicarboxylate transporter, DctP subunit (RefSeq), at 2,659,395 to 2,660,492 _2135 DvMF_2136: DvMF_2136 - Tripartite ATP-independent periplasmic transporter DctQ component (RefSeq), at 2,660,489 to 2,661,226 _2136 DvMF_2137: DvMF_2137 - TRAP dicarboxylate transporter, DctM subunit (RefSeq), at 2,661,228 to 2,662,511 _2137 DvMF_2138: DvMF_2138 - transcriptional regulator, LysR family (RefSeq), at 2,662,566 to 2,663,579 _2138 Position (kb) 2661 2662 2663Strain fitness (log2 ratio) -1 0 1 2at 2660.267 kb on - strand, within DvMF_2135at 2660.617 kb on - strand, within DvMF_2136at 2660.717 kb on - strand, within DvMF_2136at 2660.938 kb on + strand, within DvMF_2136at 2661.010 kb on - strand, within DvMF_2136at 2661.333 kb on + strandat 2661.338 kb on + strandat 2661.362 kb on + strand, within DvMF_2137at 2661.433 kb on - strand, within DvMF_2137at 2661.551 kb on - strand, within DvMF_2137at 2661.713 kb on - strand, within DvMF_2137at 2661.913 kb on + strand, within DvMF_2137at 2662.588 kb on + strandat 2662.714 kb on + strand, within DvMF_2138at 2663.388 kb on - strand, within DvMF_2138at 2663.409 kb on + strand, within DvMF_2138at 2663.417 kb on - strand, within DvMF_2138

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Per-strain Table

Position Strand Gene LocusTag Fraction Defined MoLS4
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2,660,267 - DvMF_2135 0.79 +0.2
2,660,617 - DvMF_2136 0.17 +0.4
2,660,717 - DvMF_2136 0.31 -0.1
2,660,938 + DvMF_2136 0.61 +0.1
2,661,010 - DvMF_2136 0.71 -0.1
2,661,333 + -0.4
2,661,338 + -0.3
2,661,362 + DvMF_2137 0.10 -0.2
2,661,433 - DvMF_2137 0.16 +1.0
2,661,551 - DvMF_2137 0.25 +1.8
2,661,713 - DvMF_2137 0.38 -0.5
2,661,913 + DvMF_2137 0.53 -0.3
2,662,588 + -0.2
2,662,714 + DvMF_2138 0.15 +0.4
2,663,388 - DvMF_2138 0.81 -0.5
2,663,409 + DvMF_2138 0.83 -0.6
2,663,417 - DvMF_2138 0.84 -0.4

Or see this region's nucleotide sequence