Experiment: Defined MoLS4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2053 and DvMF_2054 are separated by 348 nucleotides DvMF_2054 and DvMF_2055 are separated by 4 nucleotides DvMF_2055 and DvMF_2056 overlap by 1 nucleotides DvMF_2056 and DvMF_2057 overlap by 1 nucleotides
DvMF_2053: DvMF_2053 - S-adenosylmethionine/tRNA-ribosyltransferase- isomerase (RefSeq), at 2,545,433 to 2,546,686
_2053
DvMF_2054: DvMF_2054 - 4Fe-4S ferredoxin iron-sulfur binding domain protein (RefSeq), at 2,547,035 to 2,547,274
_2054
DvMF_2055: DvMF_2055 - 2-ketoisovalerate ferredoxin reductase (RefSeq), at 2,547,279 to 2,548,364
_2055
DvMF_2056: DvMF_2056 - thiamine pyrophosphate protein domain protein TPP-binding (RefSeq), at 2,548,364 to 2,549,155
_2056
DvMF_2057: DvMF_2057 - pyruvate ferredoxin/flavodoxin oxidoreductase (RefSeq), at 2,549,155 to 2,549,697
_2057
Position (kb)
2547
2548
2549 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2546.287 kb on - strand, within DvMF_2053 at 2546.351 kb on - strand, within DvMF_2053 at 2546.450 kb on + strand, within DvMF_2053 at 2546.643 kb on + strand at 2546.794 kb on - strand at 2546.826 kb on + strand at 2547.084 kb on + strand, within DvMF_2054 at 2547.111 kb on - strand, within DvMF_2054 at 2547.178 kb on + strand, within DvMF_2054 at 2547.181 kb on - strand, within DvMF_2054 at 2547.189 kb on - strand, within DvMF_2054 at 2547.269 kb on + strand at 2547.269 kb on - strand at 2547.274 kb on + strand at 2547.425 kb on + strand, within DvMF_2055 at 2548.007 kb on + strand, within DvMF_2055 at 2548.223 kb on + strand, within DvMF_2055 at 2548.356 kb on - strand at 2548.430 kb on + strand at 2548.518 kb on + strand, within DvMF_2056 at 2548.987 kb on - strand, within DvMF_2056 at 2549.221 kb on + strand, within DvMF_2057
Per-strain Table
Position Strand Gene LocusTag Fraction Defined MoLS4 remove 2,546,287 - DvMF_2053 0.68 +2.3 2,546,351 - DvMF_2053 0.73 +0.7 2,546,450 + DvMF_2053 0.81 -0.4 2,546,643 + -0.3 2,546,794 - -0.4 2,546,826 + -0.9 2,547,084 + DvMF_2054 0.20 +1.7 2,547,111 - DvMF_2054 0.32 -1.7 2,547,178 + DvMF_2054 0.60 -1.8 2,547,181 - DvMF_2054 0.61 -2.0 2,547,189 - DvMF_2054 0.64 -2.3 2,547,269 + -0.9 2,547,269 - -0.5 2,547,274 + -1.8 2,547,425 + DvMF_2055 0.13 -2.0 2,548,007 + DvMF_2055 0.67 -0.5 2,548,223 + DvMF_2055 0.87 -2.1 2,548,356 - -1.6 2,548,430 + -2.0 2,548,518 + DvMF_2056 0.19 -0.3 2,548,987 - DvMF_2056 0.79 -1.5 2,549,221 + DvMF_2057 0.12 -1.4
Or see this region's nucleotide sequence