Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2032

Experiment: Defined MoLS4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2031 and DvMF_2032 are separated by 143 nucleotidesDvMF_2032 and DvMF_2033 overlap by 1 nucleotides DvMF_2031: DvMF_2031 - ribonucleotide-diphosphate reductase subunit alpha (RefSeq), at 2,516,071 to 2,518,383 _2031 DvMF_2032: DvMF_2032 - cell division ATP-binding protein FtsE (RefSeq), at 2,518,527 to 2,519,369 _2032 DvMF_2033: DvMF_2033 - protein of unknown function DUF214 (RefSeq), at 2,519,369 to 2,520,271 _2033 Position (kb) 2518 2519 2520Strain fitness (log2 ratio) -1 0 1at 2517.587 kb on - strand, within DvMF_2031at 2517.664 kb on - strand, within DvMF_2031at 2517.691 kb on - strand, within DvMF_2031at 2517.720 kb on + strand, within DvMF_2031at 2517.748 kb on + strand, within DvMF_2031at 2517.783 kb on + strand, within DvMF_2031at 2517.990 kb on - strand, within DvMF_2031at 2518.212 kb on + strandat 2518.299 kb on - strandat 2518.312 kb on - strandat 2518.321 kb on + strandat 2518.383 kb on + strandat 2518.391 kb on - strandat 2518.391 kb on - strandat 2518.391 kb on - strandat 2518.391 kb on - strandat 2518.486 kb on - strandat 2518.510 kb on + strandat 2518.512 kb on - strandat 2518.667 kb on + strand, within DvMF_2032at 2518.686 kb on - strand, within DvMF_2032at 2518.854 kb on - strand, within DvMF_2032at 2519.077 kb on - strand, within DvMF_2032at 2519.077 kb on - strand, within DvMF_2032at 2519.139 kb on - strand, within DvMF_2032at 2519.221 kb on + strand, within DvMF_2032at 2519.570 kb on + strand, within DvMF_2033at 2519.570 kb on + strand, within DvMF_2033at 2519.615 kb on - strand, within DvMF_2033at 2519.617 kb on - strand, within DvMF_2033at 2519.643 kb on + strand, within DvMF_2033at 2519.645 kb on - strand, within DvMF_2033at 2519.777 kb on + strand, within DvMF_2033at 2519.780 kb on - strand, within DvMF_2033at 2519.834 kb on + strand, within DvMF_2033at 2519.845 kb on + strand, within DvMF_2033at 2519.887 kb on - strand, within DvMF_2033at 2519.956 kb on - strand, within DvMF_2033at 2519.965 kb on + strand, within DvMF_2033at 2520.085 kb on - strand, within DvMF_2033at 2520.186 kb on - strandat 2520.197 kb on - strandat 2520.208 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Defined MoLS4
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2,517,587 - DvMF_2031 0.66 -0.3
2,517,664 - DvMF_2031 0.69 -0.8
2,517,691 - DvMF_2031 0.70 -0.4
2,517,720 + DvMF_2031 0.71 -0.3
2,517,748 + DvMF_2031 0.73 -0.4
2,517,783 + DvMF_2031 0.74 -0.4
2,517,990 - DvMF_2031 0.83 -0.5
2,518,212 + -0.4
2,518,299 - -0.7
2,518,312 - -0.1
2,518,321 + -0.1
2,518,383 + -0.4
2,518,391 - -0.2
2,518,391 - -0.8
2,518,391 - +0.1
2,518,391 - -0.1
2,518,486 - -0.4
2,518,510 + -0.6
2,518,512 - -0.3
2,518,667 + DvMF_2032 0.17 -0.4
2,518,686 - DvMF_2032 0.19 -0.1
2,518,854 - DvMF_2032 0.39 -0.3
2,519,077 - DvMF_2032 0.65 -0.3
2,519,077 - DvMF_2032 0.65 -1.0
2,519,139 - DvMF_2032 0.73 -0.9
2,519,221 + DvMF_2032 0.82 -0.2
2,519,570 + DvMF_2033 0.22 -0.3
2,519,570 + DvMF_2033 0.22 -0.6
2,519,615 - DvMF_2033 0.27 -0.0
2,519,617 - DvMF_2033 0.27 -0.1
2,519,643 + DvMF_2033 0.30 -0.2
2,519,645 - DvMF_2033 0.31 -0.4
2,519,777 + DvMF_2033 0.45 +0.0
2,519,780 - DvMF_2033 0.46 -0.4
2,519,834 + DvMF_2033 0.51 -0.0
2,519,845 + DvMF_2033 0.53 -0.4
2,519,887 - DvMF_2033 0.57 -0.2
2,519,956 - DvMF_2033 0.65 -0.3
2,519,965 + DvMF_2033 0.66 -0.2
2,520,085 - DvMF_2033 0.79 -0.4
2,520,186 - -0.4
2,520,197 - -0.3
2,520,208 + -0.3

Or see this region's nucleotide sequence