Experiment: Defined MoLS4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1943 and DvMF_1944 are separated by 129 nucleotides DvMF_1944 and DvMF_1945 are separated by 87 nucleotides DvMF_1945 and DvMF_1946 are separated by 247 nucleotides
DvMF_1943: DvMF_1943 - ribonuclease II (RefSeq), at 2,398,885 to 2,401,092
_1943
DvMF_1944: DvMF_1944 - protein of unknown function DUF205 (RefSeq), at 2,401,222 to 2,401,950
_1944
DvMF_1945: DvMF_1945 - threonine synthase (EC 4.2.3.1) (from data) , at 2,402,038 to 2,403,516
_1945
DvMF_1946: DvMF_1946 - Phosphoribosylaminoimidazolecarboxamide formyltransferase (RefSeq), at 2,403,764 to 2,404,363
_1946
Position (kb)
2402
2403
2404 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 2402.018 kb on + strand at 2402.176 kb on + strand at 2402.353 kb on - strand, within DvMF_1945 at 2402.809 kb on - strand, within DvMF_1945 at 2403.039 kb on + strand, within DvMF_1945 at 2403.047 kb on - strand, within DvMF_1945 at 2403.047 kb on - strand, within DvMF_1945 at 2403.404 kb on + strand at 2403.701 kb on - strand at 2403.902 kb on + strand, within DvMF_1946 at 2403.917 kb on + strand, within DvMF_1946 at 2404.014 kb on + strand, within DvMF_1946 at 2404.026 kb on + strand, within DvMF_1946 at 2404.071 kb on + strand, within DvMF_1946 at 2404.074 kb on - strand, within DvMF_1946 at 2404.212 kb on - strand, within DvMF_1946 at 2404.369 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Defined MoLS4 remove 2,402,018 + -0.6 2,402,176 + -3.2 2,402,353 - DvMF_1945 0.21 -3.6 2,402,809 - DvMF_1945 0.52 -4.0 2,403,039 + DvMF_1945 0.68 -2.7 2,403,047 - DvMF_1945 0.68 -4.7 2,403,047 - DvMF_1945 0.68 -4.8 2,403,404 + -4.4 2,403,701 - +0.1 2,403,902 + DvMF_1946 0.23 -0.6 2,403,917 + DvMF_1946 0.26 -3.6 2,404,014 + DvMF_1946 0.42 -3.1 2,404,026 + DvMF_1946 0.44 -3.8 2,404,071 + DvMF_1946 0.51 -2.7 2,404,074 - DvMF_1946 0.52 -3.7 2,404,212 - DvMF_1946 0.75 -1.1 2,404,369 + -0.2
Or see this region's nucleotide sequence